High-throughput genome sequencing of lichenizing fungi to assess gene loss in the ammonium transporter/ammonia permease gene family

Table 4 Presence/absence of ammonium transporter/ammonia permease genes and 20 conserved test genes

	Acarospora strigata	Arthonia rubrocincta	Dibaeis baeomyces	Endocarpon pallidulum	Graphis scripta	Leptogium austroamericanum	Peltula cylindrica	Physciacf. stellaris
*mep1a* (MEP α)	0	0	X	0	X	0	0	0
*mep1b* (MEP α)	0	0	X	0	0	0	0	0
*mep2* (MEP γ, high-affinity)	X	X	X	X	0	X	X	X
*mep3* (MEP γ, low-affinity)	X	X	X	X	X	X	X	X
*amd1*	X	X	X	X	X	X	X	X
*bub2*	X	X	X	X	X	X	X	X
*cct2*	X	X	X	X	X	X	X	X
*cox15*	X	X	X	X	X	X	X	X
*ctk1*	X	X	X	X	X	X	X	X
*dpb3*	X	X	X	X	X	X	X	X
*eft2*	X	X	X	X	X	X	X	X
*fal1*	X	X	X	X	X	X	X	X
*frs2*	X	X	X	X	X	X	X	X
*gln4*	X	X	X	X	X	X	X	X
*krr1*	X	X	X	X	X	X	X	X
*mcm7*	X	X	X	X	X	X	X	X
*ost1*	X	X	X	X	X	X	X	X
*ret1*	X	X	X	X	X	X	X	X
*rio1*	X	X	X	X	X	X	X	X
*rpa135*	X	X	X	X	X	X	X	X
*rpb1*	X	X	X	X	X	X	X	X
*rpb2*	X	X	X	X	X	X	X	X
*rpo31*	X	X	X	X	X	X	X	X
*sec15*	X	X	X	X	X	X	X	X

ISSN: 1471-2164