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Table 1 Biological interpretation of the 34 clusters obtained from discrete transition profiles

From: Transcriptional and epigenetic signatures of zygotic genome activation during early drosophila embryogenesis

Experiment Profiles Nucleo-cytoplasmic ratio NC Gene number Biological interpretation
Pilot ddss   35  
Lu d d D d d H NC 41 Maternal mRNA degraded during cellularisation
Lu d d D d s H Maternal clock 165  
Pilot dsss   885  
Lu d s D d s H NC 37 Maternal mRNA degraded during slow phase of cellularisation
Lu d s D s s H Maternal clock 406  
Pilot dssu   11 Maternal mRNA degraded during slow phase of cellularisation
     and zygotic mRNAs transcription during late phase of gastrulation
Lu d s D s u H Maternal clock 163  
Pilot dsus   13 Maternal mRNA degraded during slow phase of cellularisation and zygotic mRNAs transcription during early phase of gastrulation
Pilot duss   66 Maternal mRNA degraded during slow phase of cellularisation and zygotic mRNAs transcription during fast phase of cellularisation
Pilot sdds   23  
Lu s d D s d H NC 91  
Lu s d D d d H Maternal clock 61 Maternal mRNA degraded from fast phase of cellularisation
Lu s d D d s H Maternal clock 97  
Pilot sdss   415  
Pilot ssdd   12  
Lu s s D s d H Horloge maternelle 111 Maternal mRNA degraded from early phase of gastrulation
Pilot ssds   22  
Pilot sssd   77 Maternal mRNA degraded from late phase of gastrulation
Pilot sssu   28 Zygotic mRNAs transcription during late phase of gastrulation
Pilot ssus   21 Zygotic mRNAs transcription during early phase of gastrulation
Lu s s D s u H Maternal clock 164  
Pilot suss   75 Zygotic mRNAs transcription during fast phase of cellularisation
Pilot suus   11  
Lu s u D s u H NC 154  
Lu s u D u u H Maternal clock 47  
Pilot udss*   23 Transient zygotic mRNAs transcription during cellularisation
Pilot ussd*   16  
Pilot usss*   87  
Pilot uuss*   23  
Lu u s D u s H * NC 14 Zygotic mRNAs transcription during slow phase of cellularisation
Lu u s D s s H * Maternal clock 24  
Lu u u D u u H * NC 60  
Lu u u D u s H * Maternal clock 27  
  1. Stars beside the discrete profiles indicate clusters merged into the ZGA cluster.