miRNA | Target transcript | Category | Cleavage | Reads at | Position | Target annotation |
---|---|---|---|---|---|---|
 |  |  | Site | Cleavage | Penalty |  |
 |  |  |  | Site | Score |  |
Ptc-miR156k | POPTR_0013s06910.1 | III | 799 | 224 | 4 | Glucose-6-phosphate/phosphate |
Ptc-miR159a-c | POPTR_0011s11490.1 | III | 428 | 153 | 4 | Methionine sulfoxide reductase B 1 |
Ptc-miR159e | POPTR_0006s16050.1 | III | 1014 | 134 | 4 | Catalytic |
Ptc-miR159f | POPTR_0002s05060.1 | III | 372 | 99 | 4 | Protein kinase |
Ptc-miR164f | POPTR_0007s12070.1 | III | 623 | 337 | 4 | PS II oxygen-evolving complex 1 |
Ptc-miR164f | POPTR_0005s13860.1 | III | 623 | 337 | 4 | PS II oxygen-evolving complex 1 |
Ptc-miR166a-q | POPTR_0009s01990.1/2 | I | 574 | 469 | 3 | Transcription factor |
Ptc-miR166a-q | POPTR_0004s22090.1 | I | 563 | 766 | 2.5 | Transcription factor |
Ptc-miR167a-e | POPTR_0012s09730.1 | I | 946 | 694 | 3.5 | NOP56 (Arabidopsis homolog of |
 |  |  |  |  |  | nucleolar protein) |
Ptc-miR167f/g | POPTR_0013s01580.1 | II | 285 | 239 | 4 | Function unknown |
Ptc-miR169z | POPTR_0018s11310.1 | III | 2204 | 118 | 4 | Eukaryotic translation initiation factor 4F |
Ptc-miR171l-n | POPTR_0003s06200.1 | III | 1615 | 89 | 3 | Function unknown |
Ptc-miR172a-c/f | POPTR_0014s06330.1 | III | 799 | 110 | 4 | Glycoprotease M22 family |
Ptc-miR172d/e | POPTR_0016s02570.1 | III | 103/172 | 1222 | 4 | Function unknown |
Ptc-miR172d/e | POPTR_0001s44680.1 | III | 186 | 111 | 4 | Apolipoprotein D-related |
Ptc-miR172g/h | POPTR_0001s44680.1 | III | 186 | 111 | 3.5 | Apolipoprotein D-related |
Ptc-miR172i | POPTR_0015s13920.1 | III | 446 | 174 | 3.5 | Chlororespiration reduction 1 |
Ptc-miR390a-d | POPTR_0017s07350.1 | II | 2472 | 689 | 3.5 | LOX2 (lipoxygenase 2) |
Ptc-miR390a-d | POPTR_0001s05330.1 | II | 2622 | 689 | 3.5 | LOX2 (lipoxygenase 2) |
Ptc-miR390a-d | POPTR_0005s11640.1 | III | 9458 | 108 | 4 | FAT domain-containing protein |
Ptc-miR390a-d | POPTR_0328s00200.1 | II | 2622 | 1180 | 3.5 | LOX2 (lipoxygenase 2) |
Ptc-miR396a/b | POPTR_0004s18020.1/2 | III | 547 | 140 | 3.5 | MYB4 |
Ptc-miR396f | POPTR_0004s18020.1/2 | III | 547 | 140 | 3.5 | MYB4 |
Ptc-miR397c | POPTR_0002s01740.1 | III | 135 | 163 | 3.5 | PETE1 (plastocyanin 1) |
Ptc-miR397c | POPTR_0009s05960.1 | III | 1660 | 104 | 4 | Hydrolase |
Ptc-miR398a | POPTR_0010s06990.1/2 | III | 1428 | 346 | 4 | DC1 domain-containing |
Ptc-miR473a | POPTR_0602s00210.1 | I | 850 | 327 | 4 | VEP1 (vein patterning 1) |
Ptc-miR475d | POPTR_0003s20310.1/3 | I | 1898 | 544 | 4 | Zinc finger (CCCH-type) family protein |
Ptc-miR476a | POPTR_0001s21140.1 | III | 145 | 137 | 3.5 | Post-illumination chlorophyll |
 |  |  |  |  |  | Fluorescence increase protein |
Ptc-miR403a-c | POPTR_0016s03150.1 | III | 637 | 156 | 4 | Cytochrome p450 |
Ptc-miR403a-c | POPTR_0016s03160.1 | III | 634 | 156 | 4 | Cytochrome p450 |
Ptc-miR482.1 | POPTR_0017s06100.1 | I | 1247 | 1312 | 3.5 | UDP-glucosyl transferase |
Ptc-miR482.1 | POPTR_0009s13280.1 | III | 1036 | 94 | 4 | Translation initiation factor |
Ptc-miR482.1 | POPTR_0010s13860.1 | III | 152 | 101 | 4 | ATP-dependent Clp protease |
 |  |  |  |  |  | Adaptor protein |
Ptc-miR482.1 | POPTR_0017s06080.1 | I | 914 | 1312 | 3.5 | UDP-glucosyl transferase |
Ptc-miR482.1 | POPTR_0322s00200.1 | I | 1247 | 1312 | 3.5 | UDP-glucosyl transferase |
Ptc-miR482.1 | POPTR_0017s06120.1 | I | 1010 | 1312 | 3.5 | UDP-glucosyl transferase |
Ptc-miR482.1 | POPTR_0001s27260.1 | III | 1033 | 144 | 3.5 | Carotenoid cleavage dioxygenase 1 |
Ptc-miR482.1 | POPTR_0009s06530.1 | III | 1051 | 144 | 4 | Carotenoid cleavage dioxygenase 1 |
Ptc-miR482.1 | POPTR_0007s00550.1 | III | 337 | 228 | 4 | NADP-dependent |
Ptc-miR530b | POPTR_0002s24070.1 | III | 424 | 104 | 4 | Photosystem I subunit L |
Ptc-miR1444a | POPTR_0014s10790.1 | III | 2569 | 159 | 3.5 | Preprotein translocase secA |
Ptc-miR1444a | POPTR_0014s11380.1 | III | 2368 | 135 | 3.5 | Pentatricopeptide (PPR) |
Ptc-miR1446a-e | POPTR_0014s06190.1/2 | II | 677 | 511 | 4 | Unfertilized embryo sac 10 |
Ptc-miR1446a-e | POPTR_0001s34380.1/2 | III | 295 | 178 | 4 | 16S rRNA processing |
Ptc-miR1446a-e | POPTR_0011s13770.2 | III | 55 | 204 | 3.5 | UBQ10 (Polyubiquitin 10) |
Ptc-miRn6 | POPTR_0001s11990.1/2/3 | III | 259 | 98 | 1 | Function unknown |
Ptc-miRn7 | POPTR_0001s11990.1/2/3 | III | 259 | 98 | 0.5 | Function unknown |
Ptc-miRn7 | POPTR_0014s01740.1/2 | II | 723 | 366 | 3.5 | APT1 (Adenine phosphoribosyl |
 |  |  |  |  |  | transferase 1) |
Ptc-miRn8 | POPTR_0001s40480.1 | III | 656 | 1443 | 4 | Glycolate oxidase |
Ptc-miRn13 | POPTR_0018s08940.1 | III | 1605 | 116 | 4 | Abnormal inflorescence meristem |
Ptc-miRn26 | POPTR_0016s00510.1 | III | 1233 | 265 | 4 | Heat shock protein 81-4 |
Ptc-miRn30 | POPTR_0002s07540.1 | III | 528 | 75 | 3.5 | SKP2A (F-box protein) |
Ptc-miRn32 | POPTR_0014s16800.1 | III | 504 | 93 | 4 | Beta-catenin repeat family protein |
Ptc-miRn33 | POPTR_0019s08960.1 | III | 3244 | 134 | 4 | Function unknown |
Ptc-miRn37 | POPTR_0003s08800.1 | III | 585 | 108 | 4 | Pentatricopeptide (PPR) |
Ptc-miRn38 | POPTR_0011s17280.1 | III | 584 | 170 | 4 | PEX5 (Peroxin 5) |
 |  |  |  |  |  | Signal-1 binding |
Ptc-miRn40 | POPTR_0001s07220.1 | III | 305 | 79 | 2 | mTERF(mitochondrial transcription |
 |  |  |  |  |  | termination factor family protein) |
Ptc-miRn40 | POPTR_0005s20140.1 | III | 1030 | 119 | 4 | Thylakoidal ascorbate peroxidase |
Ptc-miRn49 | POPTR_0011s01280.1 | III | 791 | 90 | 4 | Copper/zinc-superoxide |
 |  |  |  |  |  | dismutase 2 |