Transcriptional profiling of bud dormancy induction and release in oak by next-generation sequencing

BMC Genomics

Table 1 454-pyrosequencing and assembly statistics for endo- and ecodormancy libraries

	Endodormancy		Ecodormancy		Total
	LC1	SJ1	LC2	SJ2
SRA accession number	SRX019071	SRX019073	SRX019072	SRX019075
Number of reads	115,050	79,345	137,380	164,140	495,915
Number of reads passed to assembly	70,019	44,732	98,725	138,921	352,397
No. singletons in OakContiV1 from each library (a)	9,937	4,857	15,789	15,931	46,514
No. contigs in OakContigV1 within which reads are assembled (b)	24,030		33,383		41,731*
No. unigene elements in OakContigV1 (a)+(b)	38,824		65,103		88,245*

* The values are not a simple sum of those for endo- and ecodormancy, because there were common contigs to which reads from both libraries were mapped.

ISSN: 1471-2164