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Table 1 Origin of the samples used, chromosome numbers, genome constitution if known, and the copy numbers of DNA fragments from each accession used for phylogenetic analysis

From: Novel genomes and genome constitutions identified by GISH and 5S rDNA and knotted1 genomic sequences in the genus Setaria

Species

Origin

Accession number

Code

Ploidy level

Genome

Copy 5SrDNA

Copy knotted1

S. viridis *

China (Hebei)

N033

S. vir-Q24

2n = 2x = 18

AA

1

1

S. viridis

Russia

09005

S. vir-W56

2n = 2x = 18

AA

1

1

S. italica +

China (Henan)

00024169

S. ita-Y1

2n = 2x = 18

AA

1

1

S. italica

South Africa, (Transvaal)

PI 209909

S. ita-C238

2n = 2x = 18

AA

1

1

Qing 9*+ (unidentified species)

China (Hebei)

N011

Qin9

2n = 2x = 18

BB

1

1

S. adhaerans *+

Spain

02448

S. adh-W94

2n = 2x = 18

BB

1

1

S. adhaerans

Hawaii

25001

S. adh-W41

2n = 2x = 18

BB

1

1

S. grisebachii *

Mexico

03001

S. gri-W8

2n = 2x = 18

CC

1

1

S. plicata *

China (Kunming)

25001

S. pli-N195

2n = 4x = 36

X(EE)

1

2

S. glauca *+

Iowa

04004

S. gla-W12

2n = 4x = 36

X(DD)

1

1

S. glauca

Canada

04005

S. gla-W13

2n = 4x = 36

X(DD)

1

1

S. glauca

Japan

04002

S. gla-W10

2n = 8x = 72

X(DD)

2

2

S. glauca

France

14003

S. gla-W82

2n = 4x = 36

X(DD)

1

1

S. lachnea +

Australia

11001

S. lac-W74

2n = 4x = 36

CCC’C’

1

2

S. palmifolia +

China (Kunming)

26001

S. pal-N193

2n = 6x = 54

X(EE)

3

2

S. parviflora +

Brazil

13002

S. par-W79

2n = 4x = 36

X(DD)

2

2

S. arenaria +

China (Kunming)

27001

S. are-N196

2n = 6x = 54

X(FF)

4

2

S. verticillata

France

08006

S. ver-W42

2n = 4x = 36

AABB

2

2

S. faberi

Russia

02005

S. fab-W5

2n = 4x = 36

AABB

2

1

S. faberi

Japan

02006

S. fab-W7

2n = 4x = 36

AABB

2

2

S. queenslandica

Australia

PI 316342

S. que-W89

2n = 4x = 36

AAAA

2

1

  1. Note: The materials marked with * was used to be labeled as probe. The materials marked with + was used to make chromosome preparations. All materials were used for phylogenetic analysis. The putative genome constitution X represents an unknown genome constitution and the capital letter in the bracket of the Genome column indicated the novel genomes identified in the paper.