Table 3 Predominant transcripts in the cDNA libraries generated from P. ginseng roots, stems, leaves and flowers
Unigene ID | Subject | Annotation | No. of reads |
|---|---|---|---|
Root | |||
contig03234 | vvi:100267971 | Hypothetical protein | 946 |
contig03264 | vvi:100267971 | Hypothetical protein | 921 |
contig08673 | sp|O24339| | Catalase | 904 |
contig 08301 | sp|P24669 | Superoxide dismutase | 872 |
contig01891 | gb|ACH72969.1| | Latex-like protein | 862 |
contig02117 | sp|P83618| | Ribonuclease-like storage protein | 846 |
contig08057 | ref|XP_002467304.1| | Hypothetical protein | 838 |
contig08066 | ref|XP_002488947.1| | Hypothetical protein | 788 |
contig08059 | pop:POPTR_265927 | Hypothetical protein | 780 |
contig09140 | vvi:100257371 | 1,4-alpha-glucan branching enzyme | 776 |
Stem | |||
contig01514 | sp|Q9C8U9| | Phloem protein 2-like protein | 993 |
contig01413 | gb|ABF48477.1| | Panax ginseng dehydrin 4 | 953 |
contig04579 | pop:POPTR_820375 | Hypothetical protein | 948 |
contig02872 | sp|P04778| | Chlorophyll a-b binding protein 1 | 941 |
contig04578 | emb|CAH59408.1| | Hypothetical protein | 920 |
contig02875 | sp|P27495| | Chlorophyll a-b binding protein 40 | 915 |
contig04448 | sp|Q42580| | Peroxidase 21 | 911 |
contig02517 | pop:POPTR_718004 | Hypothetical protein | 890 |
contig02408 | ref|XP_002299525.1| | Hypothetical protein | 887 |
contig02549 | ref|YP_003934332.1| | Photosystem II PsbK protein | 859 |
Leaf | |||
contig00303 | rcu:RCOM_0030020 | Ribulose bisphosphate carboxylase small chain | 19345 |
contig00304 | sp|P10795| | Ribulose bisphosphate carboxylase small chain 1A | 18860 |
contig00004 | rcu:RCOM_1571640 | Ribulose bisphosphate carboxylase small chain 1B | 11627 |
contig00270 | rcu:RCOM_1158790 | Ribulose bisphosphate carboxylase small chain | 7879 |
contig00520 | rcu:RCOM_1158790 | Ribulose bisphosphate carboxylase small chain | 6692 |
contig00325 | sp|P23540| | Ribonuclease | 3909 |
contig01392 | sp|P49108| | Photosystem II 10 kDa polypeptide | 3202 |
contig00936 | sp|P27497| | Chlorophyll a-b binding protein M9 | 2041 |
contig00949 | sp|P13851| | Chlorophyll a-b binding protein 1 | 1955 |
contig02266 | ref|XP_002273037.1| | Hypothetical protein | 1785 |
Flower | |||
contig01060 | rcu:RCOM_1158790 | Ribulose bisphosphate carboxylase small chain | 999 |
contig04296 | sp|P92919| | Chlorophyll a-b binding protein | 942 |
contig01114 | sp|Q40250| | Ribulose bisphosphate carboxylase small chain | 932 |
contig26298 | zma:100192931 | Histone H4 | 919 |
contig04288 | sp|P07371| | Chlorophyll a-b binding protein AB80 | 887 |
contig05604 | ref|XP_002312129.1| | Hypothetical protein | 881 |
contig33033 | pop:POPTR_826664 | Hypothetical protein | 830 |
contig00507 | gb|AAX40470.1| | Hypothetical protein | 788 |
contig04848 | sp|Q40519| | Photosystem II 10 kDa polypeptide | 772 |
contig14522 | sp|P50156| | Probable aquaporin TIP1-1 | 754 |