Table 4 Candidate miRNAs in P. ginseng
miRNA | Query miRNAs | ML | Mature sequence | NM | Arm | GC% | PL | MFE | MFEI | EST ID |
|---|---|---|---|---|---|---|---|---|---|---|
pgi-miR1128 | ssp-miR1128 | 21 | UGCUACUCCCUCCGUCCCAAA | 5 | 5′ | 22 | 290 | 99.2 | 1.55 | G8WERZI02JSLMP |
pgi-miR827 | tcc-miR827 | 21 | UUAGAUGAUCAUCAGCAAACA | 1 | 3′ | 32 | 117 | 43.2 | 1.15 | G8WERZI01D2S8J |
pgi-miR1439 | osa-miR1439 | 21 | UUUUGGAACGGAGGGAGUAUU | 4 | 3′ | 28 | 294 | 92.6 | 1.12 | G8WERZI01A17SA |
pgi-miR5658 | ath-miR5658 | 21 | AUGAUGAUGAUGAUGAUGAGG | 3 | 3′ | 39 | 80 | 34.7 | 1.11 | G9IMXQ301ESZFB |
pgi-miR396i-3p | gma-miR396i-3p | 21 | GUUCAAUAAAGCUGUGGGAAG | 1 | 3′ | 43 | 119 | 54.6 | 1.07 | G9IMXQ302GOGE4 |
pgi-miR390b | bdi-miR390b | 21 | AAGCUCAGGAGGGAUAGCGCC | 1 | 5′ | 39 | 175 | 72.5 | 1.06 | G9IMXQ302H2ZM1 |
pgi-miR5021 | ath-miR5021 | 20 | GAAGAAGAAGAAGAAGAAAA | 3 | 5′ | 32 | 134 | 44.8 | 1.04 | G9IMXQ301DYCTK |
pgi-miR156b | vun-miR156b | 21 | UGACAGAAGACUAGAGAGCAC | 1 | 5′ | 44 | 112 | 49.6 | 1.01 | G9IMXQ302IGRXR |
pgi-miR403b | tcc-miR403b | 21 | UUAGAUUCACGCACAAACUCG | 3 | 3′ | 41 | 117 | 46.8 | 0.98 | G9IMXQ301CU7GZ |
pgi-miR172 | aau-miR172 | 22 | UGAGAAUCUUGAUGAUGCUGCA | 3 | 3′ | 44 | 171 | 71 | 0.94 | G9IMXQ301B4R7M |
pgi-miR408 | vun-miR408 | 21 | AUGCACUGCCUCUUCCCUGGC | 4 | 3′ | 50 | 115 | 53.6 | 0.93 | G9IMXQ301BH247 |
pgi-miR399d | tcc-miR399d | 21 | UGCCAAAGGAGAUUUGCCCGG | 3 | 3′ | 41 | 122 | 45.2 | 0.9 | G8WERZI01A00R5 |
pgi-miR482 | gra-miR482 | 22 | UCUUGCCAAUUCCUCCCAUUCC | 3 | 3′ | 43 | 97 | 37.2 | 0.89 | G9IMXQ301C4CDG |
pgi-miR3441.1 | aly-miR3441.1 | 20 | UUCAAAGCCUCUUUGAAGGA | 5 | 3′ | 38 | 68 | 21.9 | 0.85 | G9IMXQ301DXOD1 |