Table 1 Subset of differentially expressed genes (DEGs) in leaves of symptomatic sweet orange plants infected with CaLam compared with non-infected plants

GO:0042742 - Defense response to bacterium

101776

CSD1

Cytosolic copper/zinc superoxide dismutase

AT1G08830

73.5

8.04E-10

1.00E + 00

120012

CSD1

Cytosolic copper/zinc superoxide dismutase

AT1G08830

64.0

2.47E-06

1.00E + 00

111286

OSM34

Osmotin-like protein

AT4G11650

17.8

3.12E-01

1.00E + 00

119264

WRKY40

Pathogen-induced transcription factor

AT1G80840

16.8

9.25E-02

1.00E + 00

106985

WRKY40

Pathogen-induced transcription factor

AT1G80840

5.6

8.80E-01

1.00E + 00

119954

WRKY40

Pathogen-induced transcription factor

AT1G80840

5.4

8.04E-04

9.55E-01

108464

JAZ1

Similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G74950.1)

AT1G19180

7.4

9.67E-01

1.00E + 00

114567

JAZ1

Similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G74950.1)

AT1G19180

4.6

2.98E-04

9.88E-01

109695

JAZ1

Similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G74950.1)

AT1G19180

4.3

2.32E-04

9.91E-01

104101

WRKY70

Member of WRKY Transcription Factor; Group III

AT3G56400

5.1

8.62E + 00

9.97E-01

118920

CYP83B1

Oxime-metabolizing enzyme

AT4G31500

4.8

3.20E-01

1.00E + 00

115708

CYP83B1

Oxime-metabolizing enzyme

AT4G31500

4.3

2.03E-04

9.93E-01

103563

PAD4

Lipase-like gene

AT3G52430

3.7

4.91E + 00

9.99E-01

119801

NHL3

Similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis NDR1

AT5G06320

3.4

4.07E-04

9.82E-01

125507

SABP3

Carbonic anhydrase 1

AT3G01500

-2.7

7.39E-04

9.60E-01

117969

SABP3

Carbonic anhydrase 1

AT3G01500

-2.8

1.29E-04

9.96E-01

104171

SABP3

Carbonic anhydrase 1

AT3G01500

-2.8

8.72E-04

9.50E-01

103796

SABP3

Carbonic anhydrase 1

AT3G01500

-3.9

2.28E + 00

1.00E + 00

114665

CA2

Beta carbonic anhydrase

AT5G14740

-4.0

3.38E + 00

9.99E-01

125402

PSII-P

Encodes a 23 kD extrinsic protein

AT1G06680

-3.1

4.11E-04

9.81E-01

115962

PSII-P

Encodes a 23 kD extrinsic protein

AT1G06680

-4.4

5.75E-04

9.71E-01

Other ontologies related to defense response

125394

NA

Protease inhibitor, putative

AT2G38870

55.2

1.07E-01

1.00E + 00

119807

PUB22

U-box domain-containing protein

AT3G52450

45.2

3.35E-04

1.00E + 00

108272

PR3

Basic chitinase

AT3G12500

36.2

1.12E + 00

1.00E + 00

106567

PR3

Basic chitinase

AT3G12500

29.0

1.82E-04

9.93E-01

105539

PR3

Basic chitinase

AT3G12500

20.0

7.42E + 00

9.98E-01

113952

NA

Protease inhibitor, putative

AT2G38870

13.9

9.61E-02

1.00E + 00

113416

BSMT1

SABATH methyltransferase

AT3G11480

12.9

1.14E-01

1.00E + 00

118060

PR4

Similar to the antifungal chitin-binding protein

AT3G04720

12.0

2.08E + 00

1.00E + 00

117867

RLP12

Disease resistance family protein / LRR family protein

AT1G71400

10.9

1.13E-04

9.96E-01

113207

NA

Protease inhibitor, putative

AT2G38870

8.7

1.98E-01

1.00E + 00

111466

ANNAT4

Annexins

AT2G38750

8.6

8.00E + 00

9.98E-01

131326

EP3

EP3 chitinase

AT3G54420

8.3

1.05E-02

1.00E + 00

118304

ANNAT4

Annexins

AT2G38750

8.0

8.21E + 00

9.98E-01

117348

CC-NBS-LRR

Disease resistance protein (CC-NBS-LRR class), putative

AT1G50180

7. 5

9.63E-01

1.00E + 00

117318

NBS-LRR

Disease resistance protein (NBS-LRR class), putative

AT3G14470

6.7

8.61E-01

1.00E + 00

112603

MLP423

Bet v I allergen family protein

AT1G24020

6.7

8.27E-04

9.53E-01

116735

VTE2

Homogentisate phytyltransferase

AT2G18950

6.4

7.08E-04

9.62E-01

118180

VTE2

Homogentisate phytyltransferase

AT2G18950

5.9

6.88E-04

9.64E-01

111673

CERK1

Protein kinase family protein

AT3G21630

5.9

5.58E + 00

9.99E-01

118780

VTE2

Homogentisate phytyltransferase

AT2G18950

5.4

8.09E-04

9.55E-01

107982

WRKY6

transcription factor WRKY6 (WRKY6)

AT1G62300

5.3

4.03E + 00

9.99E-01

102976

NBS-LRR

Disease resistance protein (NBS-LRR class), putative

AT3G14470

5.2

8.83E-01

1.00E + 00

125093

ERF-1

Ethylene response factor subfamily B-3 of ERF/AP2 transcription factor family

AT4G17500

5.1

1.17E-04

9.96E-01

118139

NBS-LRR

Disease resistance protein (NBS-LRR class), putative

AT3G14470

5.1

3.12E-01

1.00E + 00

101619

ERF1

Ethylene response factor subfamily B-3 of ERF/AP2 transcription factor family

AT3G23240

4.8

6.40E-04

9.67E-01

118745

RLP35

Disease resistance family protein

AT3G11080

4.2

7.30E-01

1.00E + 00

110958

CC-NBS-LRR

Disease resistance protein (CC-NBS-LRR class), putative

AT1G50180

4.1

4.74E-01

1.00E + 00

123922

MYB44

Member of the R2R3 factor gene family

AT5G67300

4.1

1.77E-04

9.94E-01

127726

PUB29

U-box domain-containing protein

AT3G18710

3.8

3.30E-04

9.86E-01

123451

RLP52

Putative disease resistance protein induced by chitin oligomers

AT5G25910

3.3

2.16E + 00

1.00E + 00

100053

EDA39

EDA39 (embryo sac development arrest 39); calmodulin binding

AT4G33050

3.3

3.30E-04

9.86E-01

120034

NBS-LRR

Disease resistance protein (NBS-LRR class), putative

AT3G14460

3.2

2.27E-04

9.91E-01

109138

NA

Ethylene response factor subfamily B-4 of ERF/AP2 transcription factor family

AT5G61890

3.1

3.84E-04

9.83E-01

111503

RBOHD

NADPH/respiratory burst oxidase protein D

AT5G47910

2.7

1.98E-04

9.93E-01

109625

RLP7

Disease resistance family protein

AT1G47890

2.7

6.78E-04

9.64E-01

125586

EDS1

Component of R gene-mediated disease resistance

AT3G48090

2.5

8.09E-04

9.55E-01

118211

TIR-NBS-LRR

Disease resistance protein (TIR-NBS-LRR class), putative

AT4G12010

2.5

8.19E-04

9.54E-01

105065

AN1-like

Zinc finger (AN1-like) family protein

AT3G52800

2.4

4.11E-04

9.81E-01

103141

RLP54

Disease resistance family protein

AT5G40170

2.3

4.40E-04

9.79E-01

100163

CIPK25

Member of AtCIPKs

AT5G25110

-3.3

1.50E-04

9.95E-01

109438

ST

High similarity to flavonol sulfotransferases (FSTs)

AT2G03760

-7.9

8.62E-02

1.00E + 00

131275

NA

Disease resistance-responsive protein-related / dirigent protein-related

AT2G21100

-10.9

1.28E + 00

1.00E + 00