Strains | SAMP1/ TaSlc | SAMP3/ SlcIdr | SAMP6/ TaSlc | SAMP8/ TaSlc | SAMP10/ TaSlc | SAMP11/ SlcIdr | SAMR1/ SlcIdr | SAMR1/ TaSlc | SAMR3B/ SlcIdr | AKR/J | C57BL/6J | Average |
---|---|---|---|---|---|---|---|---|---|---|---|---|
Targeted exons | 221,784 | 221,784 | 221,784 | 221,784 | 221,784 | 221,784 | 221,784 | 221,784 | 221,784 | 221,784 | 221,784 | 221,784 |
Target exons with no coverage | 7,740 | 7,132 | 6,945 | 7,004 | 7,238 | 6,867 | 6,924 | 6,332 | 7,165 | 7,557 | 7,384 | 7,117 |
Total Target bases | 51,555,503 | 51,555,503 | 51,555,503 | 51,555,503 | 51,555,503 | 51,555,503 | 51,555,503 | 51,555,503 | 51,555,503 | 51,555,503 | 51,555,503 | 51,555,503 |
Target bases not covered | 4,530,669 | 4,368,898 | 4,182,707 | 4,142,933 | 4,167,472 | 3,987,407 | 4,013,747 | 3,824,098 | 4,138,242 | 4,334,915 | 4,556,739 | 4,204,348 |
Percent of target bases not covered | 8.8% | 8.5% | 8.1% | 8.0% | 8.1% | 7.7% | 7.8% | 7.4% | 8.0% | 8.4% | 8.8% | 8.2% |
Total reads | 51,745,673 | 35,778,184 | 46,935,236 | 49,808,616 | 46,543,914 | 60,395,876 | 55,759,506 | 92,605,357 | 59,459,968 | 33,681,727 | 33,076,734 | 51,435,526 |
Reads in target regions | 37,488,887 | 30,022,764 | 38,828,147 | 39,487,865 | 35,776,159 | 44,391,567 | 43,666,102 | 76,028,527 | 42,978,757 | 23,655,073 | 24,442,946 | 39,706,072 |
Reads off target regions | 14,256,786 | 5,755,420 | 8,107,089 | 10,320,751 | 10,767,755 | 16,004,309 | 12,093,404 | 16,576,830 | 16,481,211 | 10,026,654 | 8,633,788 | 11,729,454 |
Percent of reads in target regions | 72.4% | 83.9% | 82.7% | 79.3% | 76.9% | 73.5% | 78.3% | 82.1% | 72.3% | 70.2% | 73.9% | 76.9% |
Coverage at 1× | 91.2% | 91.5% | 91.9% | 92.0% | 91.9% | 92.3% | 92.2% | 92.6% | 92.0% | 91.6% | 91.2% | 91.8% |
Coverage at 5× | 83.0% | 81.6% | 84.4% | 85.2% | 84.8% | 86.6% | 86.5% | 89.0% | 86.3% | 80.5% | 79.9% | 84.4% |
Coverage at 10× | 71.4% | 67.1% | 73.2% | 74.6% | 73.4% | 77.6% | 77.4% | 84.0% | 77.4% | 63.1% | 62.9% | 72.9% |
Coverage at 20× | 49.6% | 41.6% | 50.9% | 52.9% | 50.0% | 57.6% | 57.2% | 72.3% | 57.6% | 34.6% | 35.1% | 50.9% |
Average depth of coverage within target regions | 31.0× | 25.3× | 32.7× | 33.0× | 29.6× | 37.0× | 36.3× | 63.7× | 35.3× | 19.5× | 20.2× | 33.1× |