Table 2 Transcription factor genes investigated
Molecular gene name | Genetic gene name | Alternative transcript annotation in WormBase | Alternative isoform encoding assessment | Comment on annotation | DNA binding domain * |
|---|---|---|---|---|---|
C07G2.2 | atf-7 | Alternative promoters | Well-supported | Â | bZIP |
ZC376.7 | atfs-1 | Intron +/− | Well-supported |  | bZIP |
C27D6.4 | crh-2 | Alternative promoters | Well-supported | Â | bZIP |
R13H8.1 | daf-16 | Alternative promoters | Well-supported | Â | WH - Fork, AT Hook |
F33H1.1 | daf-19 | Complex; alternative promoters & exon +/− | Possibly valid | EST evidence for alternative promoters, single EST for alternative internal exon | WH - RFX |
F13G11.1 | dmd-6 | Alternative promoters | Possibly valid | nested transcripts only | ZF - DM |
T22B7.1 | egl-13 | Alternative promoters | Well-supported | Â | HMG box |
F28B12.2 | egl-44 | Complex; alternative promoters & splice site variation | Well-supported | Â | TEA/ATTS |
F26D12.1 | fkh-7 | Alternative promoters | Possibly valid | nested transcripts only | ZF - C2H2 - 1 finger, WH - Fork |
K03C7.2 | fkh-9 | Alternative promoters | Possibly valid | nested transcripts only | WH - Fork |
W02C12.3 | hlh-30 | Complex; alternative promoters, intron +/− & exon +/− | Well-supported |  | bHLH |
T24H10.7 | jun-1 | Alternative promoters | Well-supported | Â | bZIP |
F54H5.4 | klf-3 | Alternative promoters | Possibly valid | RT-PCR primer derived alternative start | ZF - C2H2 - 3 fingers |
F16B4.12 | nhr-117 | Exon +/− | Possibly valid | two ESTs for alternative internal exon | ZF - NHR |
C01H6.5 | nhr-23 | Alternative promoters | Well-supported | Â | ZF - NHR |
C45E5.6 | nhr-46 | Alternative promoters | Well-supported | Â | ZF - NHR |
T09A12.4 | nhr-66 | Alternative promoters | Well-supported | Â | ZF - NHR |
F26H11.2 | nurf-1 | Complex; alternative promoters & transcript ends | Well-supported | Â | AT Hook |
T28H11.4 | pes-1 | Alternative promoters | Possibly valid | nested transcripts only | WH - Fork |
C37A2.5 | pqn-21 | Intron +/− | Possibly valid | single EST for extra intron | ZF - C2H2 - 1 finger |
C47C12.3 | ref-2 | Alternative promoters | Possibly valid | nested transcripts only | ZF - C2H2 - 3 fingers |
K08A8.2 | sox-2 | Alternative promoters | Well-supported | nested transcripts only | HMG box |
C07A12.5 | spr-3 | Intron +/− | Possibly valid | single EST for extra intron | ZF - C2H2 - 7 fingers |
ZK867.1 | syd-9 | Complex; alternative promoters, exon +/− & splice site variation | Possibly valid | nested transcripts, single EST for extra exon & splice site variant | ZF - C2H2 - 4 fingers |
T28F12.2 | unc-62 | Complex; alternative promoters & exons +/− | Well-supported |  | HD - TALE |
C30A5.7 | unc-86 | Exon +/− | Possibly valid | single EST for alternative internal exon | HD - POU |
F14F3.1 | vab-3 | Alternative promoters | Well-supported | Â | HD - PRD |
F55H12.6 | ztf-26 | Alternative promoters | Well-supported | Â | ZF - C2H2 - 3 fingers |
F13H6.1 | Â | Alternative promoters | Possibly valid | single EST for alternative unique exon | ZF - C2H2 - 3 fingers |