Table 3 Level of fractionation in the triplicated regions of the three Brassica genomes
| Â | Size (bp) | Number of potential TEs | Number of retained exons (%) | Number of retained genic regions (%)1 | Â | Number of predicted genes (%)2 | Number of ab initiogenes | Gene density (gene/bp) |
|---|---|---|---|---|---|---|---|---|
ContigA | Â | Â | Â | Â | Â | Â | Â | Â |
Arabidopsis | 221029 | Â | 388 | Â | 67 | Â | Â | Â |
A Genome | 311929 | 3 | 190 (48.97) | 46 (68.66) | Â | 29 (43.28) | 72 | 4332.35 |
B Genome | 258940 | 5 | 207 (53.35) | 44 (65.67) | Â | 35 (52.24) | 71 | 3647.04 |
C Genome | 586573 | 32 | 184 (47.42) | 43 (64.18) | Â | 28 (41.79) | 159 | 3689.14 |
| Â | Â | Â | Â | 35 genes in all 3 | Â | Â | ||
ContigB | Â | Â | Â | Â | Â | Â | Â | Â |
Arabidopsis | 341067 | Â | 496 | Â | 89 | Â | Â | Â |
A Genome | 365330 | 14 | 270 (54.44) | 55 (61.80) | Â | 41 (46.07) | 82 | 4455.24 |
B Genome | 258875 | 1 | 288 (58.06) | 62 (69.66) | Â | 46 (51.69) | 64 | 4044.92 |
C Genome | 828528 | 42 | 287 (57.86) | 55 (61.80) | Â | 40 (44.94) | 189 | 4383.75 |
| Â | Â | Â | Â | 47 genes in all 3 | Â | Â | ||
ContigC | Â | Â | Â | Â | Â | Â | Â | Â |
Arabidopsis | 182585 | Â | 243 | Â | 42 | Â | Â | Â |
A Genome | 154252 | 0 | 174 (71.60) | 34 (80.95) | Â | 25 (59.52) | 32 | 4820.38 |
B Genome | 175460 | 2 | 163 (67.08) | 36 (85.71) | Â | 31 (73.81) | 38 | 4617.37 |
C Genome | 398219 | 14 | 181 (74.49) | 34 (80.95) | Â | 29 (69.05) | 102 | 3904.11 |
| Â | Â | Â | Â | 31 genes in all 3 | Â | Â | ||
ContigD | Â | Â | Â | Â | Â | Â | Â | Â |
Arabidopsis | 327453 | Â | 456 | Â | 88 | Â | Â | Â |
A Genome | 278470 | 0 | 243 (53.29) | 64 (72.73) | Â | 42 (47.73) | 66 | 4219.24 |
B Genome | 386079 | 4 | 336 (73.68) | 73 (82.95) | Â | 48 (54.55) | 115 | 3357.21 |
C Genome | 362518 | 4 | 240 (52.63) | 64 (72.73) | Â | 45 (51.14) | 99 | 3661.80 |
| Â | Â | Â | Â | 62 genes in all 3 | Â | Â | ||
ContigE | Â | Â | Â | Â | Â | Â | Â | Â |
Arabidopsis | 112818 | Â | 222 | Â | 34 | Â | Â | Â |
A Genome | 132246 | 8 | 92 (41.44) | 17 (50.00) | Â | 14 (41.18) | 38 | 3480.16 |
B Genome | 159548 | 7 | 85 (38.29) | 15 (44.12) | Â | 14 (41.18) | 42 | 3798.76 |
C Genome | 234259 | 10 | 82 (36.94) | 16 (47.06) | Â | 13 (38.24) | 70 | 3346.56 |
| Â | Â | Â | Â | 12 genes in all 3 | Â | Â | ||
ContigF | Â | Â | Â | Â | Â | Â | Â | Â |
Arabidopsis | 387646 | Â | 503 | Â | 96 | Â | Â | Â |
A Genome | 510517 | 12 | 366 (72.76) | 80 (83.33) | Â | 65 (67.71) | 121 | 4219.15 |
B Genome | 450974 | 8 | 371 (73.76) | 84 (87.50) | Â | 70 (72.92) | 113 | 3990.92 |
C Genome | 543877 | 37 | 363 (72.17) | 86 (89.58) | Â | 62 (64.58) | 159 | 3420.61 |
| Â | Â | Â | Â | 76 genes in all 3 | Â | Â | ||