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Table 3 Coverage depth

From: Massively-parallel sequencing of genes on a single chromosome: a comparison of solution hybrid selection and flow sorting

 

≥10x coverage (%)

≥20x coverage (%)

Genotype coverage (%)

 

demoX

chrX_nonPAR

chrX_nonPAR

demoX

chrX_nonPAR

chrX_nonPAR

demoX

chrX_nonPAR

chrX_nonPAR

  

CCDS

UCSC

 

CCDS

UCSC

 

CCDS

UCSC

SHS

87.8

87.9

75.4

83.2

84.4

71.3

86.7

86.8

74.3

SHS-PE

92.0

91.6

81.3

90.2

89.8

78.9

91.6

91.2

80.8

SHS-PE Low

70.7

70.4

61.8

29.0

29.2

27.8

66.4

66.1

58.5

FS

78.2

86.5

77.4

38.9

48.7

37.5

69.9

78.8

68.9

  1. Coverage statistics for sequence data are shown as percentages. “Coverage” displays the percentage of positions in a given target having 10 or more overlapping sequence reads, or 20 or more overlapping sequence reads. “Genotype coverage” displays the percentage of positions in a given target with a high quality genotype determination: a genotype is determined (reference or variant) with a log likelihood score > =10.