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Table 5 Indel and SV determination

From: Massively-parallel sequencing of genes on a single chromosome: a comparison of solution hybrid selection and flow sorting

 

Indels - MPG

Indels - Pindel

Large deletions

Large insertions

SHS

76

-

-

-

SHS-PE

291

818

6

0

SHS-PE

30

179

1

0

LOW

FS

1,011 (28)

8,761 (215)

38 (2)

3 (0)

  1. Observed variant counts for each class. Pindel calls are divided as follows: Indels: <11bp, large deletions: > = 100bp. The size of large insertions is not determined, as the entire insertion was not covered. FS values in parentheses indicate variants detected in the demoX region + 100bp flanking.