| Indels - MPG | Indels - Pindel | Large deletions | Large insertions |
---|
SHS | 76 | - | - | - |
SHS-PE | 291 | 818 | 6 | 0 |
SHS-PE | 30 | 179 | 1 | 0 |
LOW |
FS | 1,011 (28) | 8,761 (215) | 38 (2) | 3 (0) |
- Observed variant counts for each class. Pindel calls are divided as follows: Indels: <11bp, large deletions: > = 100bp. The size of large insertions is not determined, as the entire insertion was not covered. FS values in parentheses indicate variants detected in the demoX region + 100bp flanking.