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Table 1 CUX1 binding sites on the ENCODE array

From: Long-range transcriptional regulation by the p110 CUX1 homeodomain protein on theENCODE array

# of binding sites 513
Average site width (bp) 503
Sites tested in qPCR 25
Validation rate 92%
Validation rate (with consensus) 100%
Validation rate (no consensus) 90%
  1. Number and average width of CUX1 binding sites identified on theNimbleGen HG17 ENCODE array using chromatin purified from Hs578tcells. Also shown are the number and percentage of binding sitesthat were validated in an independent ChIP experiment. Thevalidation rate is also shown independently for sites that containedthe ATCRAT consensus sequence as well as for sites that did not.