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Table 17 Number of genes on the promoter array that are regulated in responseto CUX1 overexpression or CUX1 knockdown

From: Long-range transcriptional regulation by the p110 CUX1 homeodomain protein on theENCODE array

Number of sites/target

Number of targets

Targets with profiling data

1.5 fold change

1.25 fold change

Any #

4706

4140

347

8.4%

1437

34.7%

1

3942

3527

278

7.9%

1182

33.5%

2+

643

613

**69

11.2%

***255

41.6%

  1. Effect of the number of CUX1 binding sites on the probability thattarget genes exhibit a change in expression following p110 CUX1overexpression or CUX1 knockdown, depending on the number of CUX1binding site present in their promoter region. **:P < 0.01, ***:P < 0.001 on a Fisher'sexact test vs. genes whose promoter have only 1 CUX1 bindingsite.