Skip to main content

Table 5 Binding sites and target genes predicted to be identified in promoterarrays

From: Long-range transcriptional regulation by the p110 CUX1 homeodomain protein on theENCODE array

Platform

Promoter array boundaries

% of Target genes predicted in promoter array

CUX1

C-Myc

E2F1

Nimblegen

−3.5 kb to + 0.75 kb

44.6%

36.0%

90.2%

Agilent

−5.5 kb to + 2.5 kb

57.1%

45.9%

92.2%

Affymetrix

−7.5 kb to + 2.45 kb

58.5%

48.3%

92.2%

  1. Percentages of CUX1, C-Myc and E2F1 target genes that are identifiedon the ENCODE array and whose binding site are located within theboundaries of promoters on various promoter array platforms.