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Table 6 CUX1 binding sites on the promoter array

From: Long-range transcriptional regulation by the p110 CUX1 homeodomain protein on theENCODE array

Genes on array

20593

Number of sites/gene

Number of genes

CUX1 Binding sites

5828

1

3942

Genes bound by CUX1

4706

2

643

Average Site Width (bp)

503

3

90

Sites tested in qPCR

25

4

23

Validation rate

100%

5+

8

  1. Columns 1 and 2: Number and average width of CUX1 binding sitesidentified on the NimbleGen HG18 Human Promoter Array usingchromatin purified from Hs578t cells. Also shown are the number andpercentage of binding sites that were validated in an independentChIP experiment.
  2. Columns 3 and 4: Number of genes with the indicated number of CUX1binding site. Note that validation was performed on 14 and 11 sitesthat contained or not an ATCRAT motif. All of them werevalidated.
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BMC Genomics

ISSN: 1471-2164

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