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Table 8 CUX1 consensus binding sites and bound genomic regions

From: Long-range transcriptional regulation by the p110 CUX1 homeodomain protein on theENCODE array

 

Regions

Regions with consensus

% with consensus

GC Content

Bound Regions

5828

2749

47.2%***

47.3%

Unbound Regions

5828

1020

17.5%

47.0%

  1. Columns 2–4, occurrence of the CUX1 consensus binding site,ATCRAT (where R = C or A), within the 5828 genomicregions bound by CUX1 on the promoter array. To calculate the pvalue, an equal number of randomly chosen regions of equal width wassearched for the presence of the CUX1 consensus binding site: ***:p < 0.001. Column 5 shows the GC content of bound andunbound regions.
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BMC Genomics

ISSN: 1471-2164

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