Main Geographic Region | Populations (ID) | Individuals | HWE | (%) allele frequencies LCE3 C_LCE3B-del | SNP genotype frequencies (%) | LD | ||||
---|---|---|---|---|---|---|---|---|---|---|
x2 | p-value | + | − | AA | AG | GG | r2 | |||
Sub-Saharan Africans | Pygmies* (PYG) | 44 | 0.93 | 0.33 | 64.77 | 35.23 | 0 | 13.64 | 86.36 | 0.013 |
Mandenka (MAN) | 17 | 0.78 | 0.56 | 58.82 | 41.18 | 4.55 | 22.73 | 72.73 | 0.121 | |
Yoruba (YRI) | 22 | 2.18 | 0.14 | 65.91 | 34.09 | 0 | 28.57 | 71.43 | 0.089 | |
Bantu (BAN) | 18 | 2.66 | 0.10 | 72.22 | 27.78 | 0 | 50.00 | 50.00 | 0 | |
North-African/Middle East | Mozabite* (ALG) | 26 | 0.04 | 0.84 | 32.69 | 67.31 | 0 | 21.43 | 78.57 | 0.256 |
Bedouin* (BED) | 36 | 0.47 | 0.49 | 47.22 | 52.78 | 14.63 | 53.66 | 31.71 | 0.772 | |
Druze* (DRU) | 37 | 1.87 | 0.17 | 36.49 | 63.51 | 9.09 | 56.82 | 34.09 | 1 | |
Palestinian (PAL) | 40 | 0.44 | 0.50 | 31.25 | 68.75 | 4.44 | 44.44 | 51.11 | 0.936 | |
European | French (FRA) | 27 | 1.47 | 0.23 | 40.74 | 59.26 | 16.67 | 41.67 | 41.67 | 1 |
French Basque* (BASQ) | 21 | 1.70 | 0.19 | 40.48 | 59.52 | 9.09 | 54.55 | 36.36 | 0.91 | |
Sardinian* (SARD) | 24 | 0 | 0.97 | 29.17 | 70.83 | 13.04 | 47.83 | 39.13 | 1 | |
Italian (ITL) | 17 | 0.28 | 0.60 | 31.76 | 38.24 | 35.00 | 40.00 | 25.00 | 1 | |
Orcadian* (ORC) | 16 | 2.80 | 0.09 | 31.25 | 68.75 | 23.08 | 23.08 | 53.85 | 1 | |
Russian (RUS) | 23 | 0.18 | 0.68 | 39.13 | 60.87 | 14.29 | 42.86 | 42.86 | 0.897 | |
Central-South Asians | Brahui (BRA) | 22 | 0.61 | 0.44 | 43.18 | 56.82 | 21.74 | 43.48 | 34.78 | 1 |
Balochi (BAL) | 18 | 0.21 | 0.65 | 27.78 | 72.22 | 5.00 | 40.00 | 55.00 | 0.852 | |
Makrani (MAK) | 24 | 0.67 | 0.41 | 50.00 | 50.00 | 23.81 | 42.86 | 33.33 | 0.55 | |
Sindhi (SIN) | 21 | 1.71 | 0.19 | 33.33 | 66.67 | 0 | 50.00 | 50.00 | 0.905 | |
Kalash* (KAL) | 24 | 1.53 | 0.22 | 47.92 | 52.08 | 16.67 | 55.56 | 27.78 | 0.861 | |
Burusho (BUR) | 23 | 3.19 | 0.07 | 41.30 | 58.70 | 27.27 | 31.82 | 40.91 | 1 | |
Hazara ( HAZ) | 17 | 1.14 | 0.29 | 79.41 | 20.59 | 43.75 | 56.25 | 0 | 0.904 | |
Eastern Asians | Han (CHB) | 34 | 0 | 0.98 | 38.24 | 61.76 | 0 | 52.17 | 47.83 | 0.468 |
Japanese (JPN) | 26 | 2.45 | 0.12 | 48.08 | 51.92 | 50.00 | 37.93 | 37.93 | 0.837 | |
Yaut* (YAK) | 11 | 0.55 | 0.46 | 77.27 | 22.73 | 50.00 | 31.82 | 18.18 | 1 | |
NEA | 34 | 0.54 | 0.46 | 45.59 | 54.41 | 20.59 | 52.94 | 26.47 | 0.852 | |
SEA | 36 | 0.73 | 0.40 | 29.17 | 70.83 | 5.88 | 50.00 | 44.12 | 0.537 | |
Oceania | Papuan-Melasian (OCE) | 35 | 2.31 | 0.13 | 50.00 | 50.00 | 26.47 | 41.18 | 32.35 | 0.935 |
Americans | PIMA | 22 | 0.51 | 0.48 | 25.00 | 75.00 | 9.09 | 36.36 | 54.55 | 0.804 |
MAYA | 21 | 0.94 | 0.33 | 38.10 | 61.90 | 7.14 | 57.14 | 35.71 | 1 | |
Karitiana (KAR) | 17 | 0.02 | 0.90 | 97.06 | 2.94 | 90.48 | 4.76 | 4.76 | 1 | |
Surui* (SUR) | 15 | 1.52 | 0.22 | 26.67 | 73.33 | 10.53 | 26.31 | 63.16 | 1 |