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Table 4 Secreted proteins with non-synonymous substitutions between UK isolates PST-87/7 and PST-08/21 and in tribes ranking within the top 100 potential effector tribes

From: Genome analyses of the wheat yellow (stripe) rust pathogen Puccinia striiformis f. sp. triticireveal polymorphic and haustorial expressed secreted proteins as candidate effectors

Gene ID Tribe no. Tribe ranking Length (amino acids) Similarity to HESPs or fungal AVRs 1 FIR ≥10 Kb No. of repeat units SCR protein Effector motifs (amino acid position) NLS signal PFAM mapping Infected material (reads) Haust. 1 (reads) Haust. 2 (reads) Enrichment in haustoria
               Fold change (log2) Pvalue (adj)
PST130_14637 9 6 609 No No 10 No - No No 0 0 4 1.02 0.68
PST21_19014 11 14 167 No No 0 No Y/F/WxC(85); LIAR(32) No Yes 535 120 534 -0.38 0.87
PST887_17743 11 14 185 No No 0 No Y/F/WxC(103); LIAR(32) No Yes 904 167 695 -0.61 0.70
PST130_00418 8 17 176 No No 20 No - No No 6 0 361 4.15 1.00
PST21_12116 74 20 455 No No 0 No - No Yes 298 3708b 34272b 5.99 <0.001
PST130_05023 351 22 281 No No 6 No - No Yes 2475a 7368b 62158c 3.85 0.011
PST21_18360 437 23 394 No No 0 No - No No 480 5957b 15413b 5.08 0.001
PST130_00285 317 25 207 No No 0 No - No Yes 919 6699b 36240b 4.77 0.001
PST21_15642 308 28 102 No No 0 Yes - No No 209 6002b 6286a 5.96 <0.001
PST21_17946 17 39 177 No No 3 No - No No 396 417 3015 2.21 0.19
PST21_04206 456 58 515 No No 0 No - No Yes 2563a 513 1806 -0.70 0.65
PST21_20471 21 83 376 No No 13 No - No No 24 7 34 0.05 0.69
PST43_15488 111 94 94 No No 0 Yes Y/F/WxC(23) No Yes 399 0 76 -3.81 0.17
PST21_15274 111 94 91 No No 0 Yes Y/F/WxC(23) No No 64 1 24 -2.46 0.17
  1. HESPs, Haustorial expressed secreted proteins. FIR, flanking intergenic region. SCR, small cysteine-rich. NLS, nuclear-localization signal. Haust, Haustorial library.
  2. Genes expressed in the top 10 (a), 5 (b) and 1% (c) in a particular RNAseq dataset.