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Table 1 Results of the genome wide association of sleep parameters and SNPs from the DGRP

From: Genome-wide association study of sleep in Drosophila melanogaster

Trait

Trait mean SNPs*

% Low frequency Alleles**

TraitCV E SNPs*

% Low frequency Alleles**

Overlapping SNPs (%)

Trait mean genes

TraitCV E genes

Overlapping genes

Night sleep

160 (120)

87.5

1,552 (1,175)

82.0

95.6

53

456

52

Day sleep

0 (0)

0

71 (51)

76.0

0.0

0

23

0

Night bout no.

0 (0)

0

3 (3)

33.3

0.0

0

0

0

Day bout no.

3 (3)

0

340 (198)

82.1

0.0

2

103

0

Night average bout length

16 (16)

68.8

1 (1)

100.0

0.0

6

1

0

Day average bout length

2,082 (1,174)

76.7

5 (3)

100.0

0.1

551

3

2

Waking activity

264 (214)

89.4

4,083 (2,727)

80.7

10.6

87

970

45

  1. *Numbers of SNPs listed have FDR ≤ 0.01; numbers of SNPs accounting for inversions and local LD blocks are listed in parentheses. See text for additional detail.
  2. ** Low frequency is defined here as 0.024 ≤ minor allele frequency ≤ 0.05.