Skip to main content

Table 15 Regulation of transcription and chromatin structure

From: Unscrambling butterfly oogenesis

DNA polymerase α 180KD; DNA polymerase alpha catalytic subunit (DNApol-α180) Y homolog of regulator of chromatin condensation 2; similar to CG9135 (rcc2) Y
RNA polymerase II transcriptional coactivator single stranded-binding protein c31a (ssb-c31a) Y DNA polymerase interacting tpr containing protein (dpit47) Y
polyadenylate-binding protein 2 (rox2; pabp2) Y DNA polymerase α (180kD) (DNApol-α180; pola) Y
high mobility group protein; structure specific recognition protein. fact complex subunit ssrp1 (ssrp; ssrp1) Y DNA polymerase delta (DNApol-delta) Y
similar to Drosophila melanogaster high mobility group protein d; similar to Bombyx mori high mobility group protein 1b (HMGd; HMG1b) Y DNA polymerase ϵ (DNApol-ϵ; pole) Y
domina; jumeau (jumu/dom) Y similar to DNA polymerase ϵ subunit 2 (DNApol-ϵ; pole2) Y
modulo (mod) N similar to DNA polymerase ϵ subunit 3 (DNApol-ϵ; pole3) Y
lysine-specific histone demethylase 1; suppressor of variegation 3–3 (suv3-3; su(var)3-3; lsd1) Y DNA polymerase eta (DNApol-eta; drad30a) Y
histone methyltransferase 4–20; suppressor of variegation 4–20 (suv4-20; su(var)4-20) Y DNA polymerase iota (drad30b; DNApol-iota) Y
Drosophila melanogaster suppressor of variegation 3–9 (suv3-9; su(var)3-9) Y DNA polymerase zeta; similar to mutagen-sensitive 205; rev3-like (DNApol-zeta; mus205) Y
pitkin(dominant) (ptn(d)) N replication protein a1 (rpa1) Y
Eukaryotic translation initiation factor 2 gamma subunit (eIF2g) Y replication protein a2 (rpa2) Y
suppressor of variegation 2–10; protein inhibitor of activated stat (su(var)2-10; pias; zimp; zimpb;) Y replication protein a3 (rpa3) Y
eggless (egg; SETDB1) Y replication factor c 38kD subunit (rfc38) Y
histone h3k9 methyltransferase dg9A (g9A) N (Bombyx mori) replication factor c subunit 2; rfc40 (rfc40; bm- rfc2) Y
modifier of mdg4 (mod(mdg4); e(var)3-93d) Y (Bombyx mori) replication factor c4; CG8142 (bm-rfc4) Y
suppressor of hairy wing (su(hw)) Y (Bombyx mori) replication factor c (activator 1) 5; Drosophila replication factor c subunit 3 (rfc3) Y
trithorax-like (trl; GAGA; gaf; e(var)3; e(var)62) N germ line transcription factor 1; replication factor 1 (rfc1; gnf1) Y
brahma; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member; transcription activator brg1 (smarca4; brm) Y recombination repair protein 1 (rrp1) Y
marcal1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member (marcal1; smarcal1) Y rev7 (rev7) N
snf5-related 1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 (snr1; bap45) Y trf4-1; sigma DNA polymerase (trf4-1) Y
brg-1 associated factor; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily d member 1; brahma associated protein 60kD (bap60) Y topoisomerase 1; topoisomerase i (top1) Y
dalao; brahma-associated protein 111kD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E (bap111; dalao) Y topoisomerase 2; topoisomerase II (top2; topII) Y
moira (mor; bap155) Y topoisomerase 3 alpha; topoisomerase III aplha (topIII-alpha) Y
imitation swi (dnurf; iswi; dchrac) Y topoisomerase 3 beta; topoisomerase III beta (topIII-beta) Y
Brahma associated protein 170kD (bap170) Y minichromosome maintenance 3 (mcm3) Y
Brahma associated protein 55kD (bap55) Y minichromosome maintenance 5 (mcm5) Y
helicase domino (dom) Y minichromosome maintenance 6; fs(1)k1214 (mcm6) Y
etl1 homologue; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing dead/h box 1 (etl1; smarcad) Y minichromosome maintenance 7 (mcm7) Y
Enhancer of zeste (E(z)) Y minichromosome maintenance 8; recombination-defective (mcm8; rec) Y
extra sex combs (esc) Y DNA methyltransferase 2 (mt2) Y
additional sex combs (asx) Y poly-(adp-ribose) polymerase (parp) Y
sex comb on midleg (scm) N TATA box binding protein-related factor 2 (Trf2; tlf) N
multi sex combs (mxc) N TATA box binding protein (Tbp) Y
polyhomeotic (ph-p) N tbp-associated factor 250kD (taf250; taf1) Y
sex combs extra; similar to E3 ubiquitin-protein ligase ring1 (Bombyx mori) (sce; dring) Y trithorax-related (trr) Y
polycomb (ph) Y supercoiling factor (scf; dcb-45) Y
Enhancer of polycomb (E(pc)) Y bx42; ski-interacting protein (skip) Y
posterior sex combs (psc) Y boundary element-associated factor of 32KD (beaf32) N
lethal (3) 73ah; similar to polycomb group ring finger protein 3 (l(3)73ah) Y Histone h4 (H4) Y
activating transcription factor; homologous to Bombyx activating transcription factor of chaperone (atf-2) Y Histone h3.3 (H3.3) Y
cyclic-amp response element binding protein (1,2,3)(creb; dcreba) Y Histone h2a (H2a) Y
creb binding protein; similar to nejire (crebbp(a)) Y Histone h2a variant (H2a.v) Y
retinoblastoma binding protein (rbp) Y mutagen-sensitive 308 (PolQ; mus308 ) Y
retinoblastoma binding protein 2 (jumonji/arid domain containing); little imaginal discs (rbp2; lid) Y rpd3 (hdac1; rpd3; hdac) Y
similar to retinoblastoma binding protein 6 (rbp6) Y mbd-like (mbd2/3; mbd-like) Y
tousled-like kinase (tlk) Y mediator complex subunit 6 (med6 ) Y
no child left behind; similar to wd repeat protein (nclb) Y mitochondrial single stranded DNA-binding protein (mtssb) Y
Arginine methyltransferase 1; Arginine n-methyltransferase 1 (DART1; prmt1) N homolog of recq (recq5) Y
Arginine methyltransferase 2; Arginine n-methyltransferase 2 (DART2; prmt2) N hen1 (dmhen1; pimet) Y
Arginine methyltransferase 3; Arginine n-methyltransferase 3 (DART3; prmt3) Y Eukaryotic translation initiation factor 4G (eIF4G) Y
Arginine methyltransferase 4; histone-Arginine methyltransferase carm 1 (DART4; prmt4) Y Eukaryotic translation initiation factor 4A (eIF4A) Y
Arginine methyltransferase 6; Arginine n-methyltransferase 6 (DART6; prmt6) N Eukaryotic translation initiation factor 5 (eIF5) Y
Arginine methyltransferase 7; Arginine n-methyltransferase 7 (DART7; prmt7) Y retrotransposon gypsy\envelope (gypsy\env) N
Arginine methyltransferase 8; Arginine n-methyltransferase 8 (DART8; prmt8) N jim (ovk; ovfc.k; jim) Y
Arginine methyltransferase 9; Arginine n-methyltransferase 9 (DART9; prmt9) N zelda; vielfaltig (vfl; zld) N
absent, small, or homeotic discs 1 (ash-1; ash; dash) Y Fcp1 RNA polymerase II CTD phosphatase; CG12252 (fcp1) Y
bj1 protein; homolog of regulator of chromatin condensation 1 (rangef; rcc1 ) Y   
  1. Genes identified mainly from the Drosophila melanogaster literature involved in regulation of chromatin structure during oogenesis, DNA replication, general transcription and maternal regulation of zygotic transcription in general. Presence (Y) or absence (N) of orthologous transcripts in the Pararge aegeria transcriptome is indicated.