Table 1 Comparison of genomic features between N. cyriacigeorgica GUH-2 and eight Actinobacteria
N. cyriacigeorgica | N. farcinica | R. equi | R. jostii | M. tuberculosis | M. smegmatis | C. diphtheriae | C. glutamicum | A. mediterranei | |
|---|---|---|---|---|---|---|---|---|---|
Features | GUH-2 | 10152 | ATCC 33707 | RHA1 | H37Rv | MC2 155 | NCTC 13129 | ATCC 13032 | U32 |
Size (nt) | 6,194,645 | 6,021,225 | 5,235,298 | 9,702,737 | 4,411,532 | 6,988,209 | 2,488,635 | 3,309,401 | 10,236,715 |
G + C (%) | 68.37 | 70.83 | 68.81 | 67.0 | 65.61 | 67.40 | 53.48 | 53.81 | 71.29 |
Average CDS length (nt) | 983.29 | 922.77 | 952.39 | 872.17 | 923.13 | 905.65 | 927.24 | 923.69 | 936.1 |
Average intergenic region (nt) | 171.09 | 117.23 | 109.07 | 117.54 | 114.69 | 84.84 | 119.08 | 156.45 | 126.77 |
Protein coding density (%) | 86.73 | 90.93 | 91.16 | 90.29 | 91.33 | 91.16 | 87.11 | 86.49 | 90.69 |
Protein-coding sequences (CDS) | 5.491 | 5.984 | 5124 | 9.145 | 4.454 | 7.449 | 2.491 | 3.128 | 9.988 |
Pseudogenes | 14 | Un* | 13 | 40 | 8 | 290 | 131 | 2 4 | |
rRNA (operon) | 3 | 3 | 1 | 4 | 3 | 6 | 5 | 6 | 4 |
tRNA | 49 | 53 | 52 | 52 | 45 | 47 | 54 | 60 | 52 |