RGP | GI position | Virulence gene (in or around GI) | ORF begin | ORF end | Length (kb) | Nb. of genes | Gene class | Putative role of GI | tRNA |
---|---|---|---|---|---|---|---|---|---|
Cy1 | 61471..73200 | nocyr_0048 | nocyr_0063 | 11.7 | 14 | Unknown | Unknown | 0 | |
Cy2 | 213775..239600 | nocyr_0182 | nocyr_0205 | 25.8 | 21 | Enzymes, transporters, histidine degradation, CSP | Unknown | 3 | |
Cy3 | 343550..357558 | nocyr_0300 | nocyr_0300 | nocyr_0309 | 14 | 10 | Enzymes, regulators, transporters, catalase | Adaptation to atypical conditions | 1 |
Cy4 | 387100..424100 | nocyr_0340 | nocyr_0383 | 37 | 43 | Recombinase, integrase, topisomerase, ADN pol III, cadmium inductible protein | Plasticity, adaptation | 1 | |
Cy5 | 512800..526200 | nocyr_0472 | nocyr_0488 | 13.4 | 17 | regulators, transporters | Unknown | 0 | |
Cy6 | 594300..599228 | 0547 → 0555, 0566 → 0567 | nocyr_0557 | nocyr_0561 | 4.9 | 5 | Regulators, ISNcy5 | Plasticity | 1 |
Cy7 | 1045000..1055000 | nocyr_0920 | nocyr_0925 | 10 | 6 | Unknown | Unknown | 1 | |
Cy8 | 1098658..1109690 | nocyr_0967 | nocyr_0978 | 11.3 | 11 | Integrase, endoribonuclease | Plasticity | 0 | |
Cy9 | 1480355..1548800 | nocyr_1341 | nocyr_1391 | 69.3 | 51 | Enzymes, regulators, mycosin | Virulence | 2 | |
Cy10 | 1937100..2016932 | nocyr_1792 | nocyr_1739 | nocyr_1800 | 79.8 | 68 | Enzymes, regulators, C31 phage resistance genes | Defense | 1 |
Cy11 | 2164650..2173100 | nocyr_1932 | nocyr_1940 | 8.4 | 9 | Unknown | Unknown | 0 | |
Cy12 | 2273150..2315500 | nocyr_2044 | nocyr_2082 | 42.4 | 36 | Enzymes, transporters, regulators, integrases | Plasticity | 1 | |
Cy13 | 3131000..3204200 | nocyr_2827 | nocyr_2884 | 73.2 | 58 | Enzymes, regulators, ISNcy2-b, ISNcy4, integrases, PBP | Plasticity, adaptation | 0 | |
Cy14 | 3265400..3337600 | nocyr_2933 | nocyr_2985 | 72.2 | 61 | Enzymes, Nitrate reduction/expulsion, ISNcy1-d, regulators, recombinase | Nitrite/Nitrate metabolism, plasticity | 1 | |
Cy15 | 4299671..4308500 | nocyr_3906 | nocyr_3911 | 8.8 | 6 | Cobalamin and citrate metabolism | Vit B12, energy metabolism | 0 | |
Cy16 | 4339344..4363500 | nocyr_3940 | nocyr_3962 | 24.2 | 23 | Enzymes, regulators, limonene-momooxygenase | Unknown, Adaptation | 0 | |
Cy17 | 4409577..4447497 | nocyr_4002 | nocyr_4035 | 37.9 | 34 | Enzymes, regulators, transporters | Unknown | 0 | |
Cy18 | 4523400..4592400 | nocyr_4112, nocyr_4128 | nocyr_4097 | nocyr_4162 | 69 | 66 | Enzymes, regulators, NRPS, transporters, fatty acid synthesis, spermidin, sigma factor, DHB | Fatty acid and peptide synthesis, adaptation, virulence, plasticity | 1 |
Cy19 | 5338862..5361100 | nocyr_4801 | nocyr_4818 | 22.2 | 14 | Enzymes, regulators | Unknown, vitamine métabolism | 0 | |
Cy20 | 5611900..5622135 | nocyr_5027 | nocyr_5036 | 10.2 | 10 | Unknown | Unknown | 0 | |
Cy21 | 5720300..5758400 | nocyr_5135, nocyr_5136 | nocyr_5133 | nocyr_5170 | 38.1 | 38 | Enzymes, transporters, regulators, sulfur metabolism | Energy metabolism, virulence, adaptation | 0 |
Cy22 | 5992000..6012890 | nocyr_5383 | nocyr_5404 | 20.9 | 21 | Enzymes | Unknown | 0 |