Table 1 Genome overview after automated annotation in MAGE
Characteristics | STM 2683 | STM 4661 | ||
|---|---|---|---|---|
Chromosome | Plasmid | Chromosome | Plasmid | |
Sequence length (bases) | 6,020,204 | 233,929 | 6,304,314 | 251,782 |
GC (%) | 62.53 | 60.53 | 62.44 | 60.53 |
Number of Scaffolds | 3 | 2 | 1 | 1 |
Number of Contigs | 171 | 20 | 83 | 6 |
Nosferatu Repeated Regions (%) | 5.4 | 2.47 | 4.99 | 0 |
Average CDS length (bp) | 825.98 | 755.96 | 845.13 | 838.18 |
Average intergenic length (bp) | 134.86 | 162.18 | 139.62 | 160.14 |
Protein coding density (%) | 88.01 | 86.25 | 88.01 | 87.12 |
Number of Genomic Objects (CDS, fCDS, rRNA, tRNA, miscRNA) | 6,628 | 280 | 6,791 | 274 |
Number of CDSs | 6,512 | 272 | 6,683 | 267 |
Number of fCDSs | 54 | 6 | 40 | 4 |
Number of misc_RNAs | 14 | 2 | 16 | 3 |
Number of rRNAs | 3 | 0 | 3 | 0 |
Number of tRNAs | 45 | 0 | 49 | 0 |