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Table 2 Overall rank scores of each preprocessing method

From: A data-driven approach to preprocessing Illumina 450K methylation array data

 

TypeI

TypeII

Average

raw

6.5

11

8.75

betaqn

14

13

13.5

naten

12

9

10.5

nanet

11

3

7

nanes

9.5

7.5

8.5

danes

2.5

7.5

5

danet

1

6

3.5

danen

5

12

8.5

daten1

4

4

4

daten2

8

5

6.5

nasen

9.5

1.5

5.5

dasen

2.5

1.5

2

fuks

6.5

15

10.75

tost

13

14

13.5

swan

15

10

12.5

  1. Ranks calculated from the three performance metrics applied to 11 datasets. Ranks are shown for Type I and Type II probes separately as well as averaged across both probe types. Dasen is shown to be the best preprocessing method across both probe types.
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BMC Genomics

ISSN: 1471-2164

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