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Table 2 Overall rank scores of each preprocessing method

From: A data-driven approach to preprocessing Illumina 450K methylation array data

  TypeI TypeII Average
raw 6.5 11 8.75
betaqn 14 13 13.5
naten 12 9 10.5
nanet 11 3 7
nanes 9.5 7.5 8.5
danes 2.5 7.5 5
danet 1 6 3.5
danen 5 12 8.5
daten1 4 4 4
daten2 8 5 6.5
nasen 9.5 1.5 5.5
dasen 2.5 1.5 2
fuks 6.5 15 10.75
tost 13 14 13.5
swan 15 10 12.5
  1. Ranks calculated from the three performance metrics applied to 11 datasets. Ranks are shown for Type I and Type II probes separately as well as averaged across both probe types. Dasen is shown to be the best preprocessing method across both probe types.