Skip to main content

Table 2 Selected female- and male-biased F. vesiculosus genes, based on orthology to E. siliculosus proteins

From: Sex-biased gene expression in the brown alga Fucus vesiculosus

Description No. contigs E. siliculosus Orthologue F M Veg KEGG Pfam GO
Female-biased:
Glucosylceramidase (family GH30)/ Lectin domain-like 2 CBN79893 51 4 3   PF02055; PF14200  
Mannuronan C-5-epimerase 4 1 CBN79256 24 - - K00771   30158
Chondroitin-glucuronate 5-epimerase 2 CBJ29234 26 4 7 K01795 PF00124  
Aquaporin PIP-type 2 CBN74001 15 3 4 K09864 PF00230 15250
Photosystem II reaction centre protein D1/psbA 66 CAV31176 930 291 807 K02703   
Imm upregulated 3 24 CBN74763 378 157 254    
Male-biased:
Transcription elongation factor Elf1 like 1 CBJ25475 15 36 11   PF05129  
Touch receptor neuron protein Mec-17 2 CBJ49002 2 11 -   PF05301  
Conserved unknown protein (Josephin) 1 CBJ28700 - 22 -   PF02099  
BT1 family, putative pteridine transporter 2 CBN78031 14 49 16   PF03092  
Cystathionine gamma-lyase 2 CBN75996 - 8 - K00810 PF01053 3962; 5843
1-phosphatidylinositol-4-phosphate 5-kinase/ radial spoke 2 CBN78497 - 5 - K00889   16308
Ca2+/calmodulin-dependent protein kinase 1 CBN78721 - 8 - K00908   4684; 4685
Creatine kinase 4 CBN74482 - 48 - K00933 PF02807; PF00217 5843
Creatine kinase 4 CBN77192 - 21 - K00933 PF00217 4111; 5842
PAS/PAC histidine kinase; putative blue light receptor 6 CBJ26132 - 30 - K02489 PF00989 4054
F-type H + -transporting ATPase subunit delta 2 CBJ32297 2 18 4 K02134 PF02823 5843
Calmodulin 4 CBN74598 - 25 - K02183   5842
Calmodulin 1 CBN80105 - 14 - K02183   5842
Mitogen-activated protein kinase 3 CBJ31415 - 94 - K04368 PF00069 5842
cAMP-dependent protein kinase regulator 4 CBJ34040 - 22 - K04739 PF00027 5842; 8603
Proliferating cell nuclear antigen 4 CBJ25497 3 18 - K04802 PF00705; PF02747  
Voltage dependent anion channel 3 CBN78926 5 33 12 K05862 PF01459 5842
Tubular mastigoneme-related protein (Sig)/ tenascin 3 CBJ28331 - 14 - K06252 PF07974  
SecE/Sec61-gamma subunit protein translocation complex 17 CBN73851 85 141 103 K07342 PF00584 5842; 5843; 5874
Alpha tubulin 24 CBN77373 122 387 80 K07374 PF03953; PF00091 4111; 5842; 5843
Beta tubulin 4 CBJ26064 - 14 - K07375 PF03953 5842
Beta tubulin 3 CBN79446 15 128 20 K07375 PF03953 5843
Dynein flagellar outer dynein arm light chain 1 CBJ48309 - 8 - K10411   5843
Putative flagellar outer dynein arm light chain 2 CBJ27240 - 16 2 K10419 PF03259 5842
Centrin 3 CBN74045 - 29 1 K10840 PF00036 4054; 5842; 8603
Centrin 2 CBN79657 - 8 - K10840   5842; 5843
Histone H2A 5 CBJ31989 7 74 2 K11251 PF00125 5842; 5843; 5874
Histone H2A 2 CBJ32072 7 96 12 K11251 PF00125 5842
Histone H2B 13 CBJ32076 2 31 7 K11252 PF00125 5842; 5843; 5874
Histone H3 5 CBN79887 32 135 73 K11253 PF00125 5842; 5843; 5874
AP-2 complex subunit sigma-1 1 CBN77646 2 14 1 K11827 PF01217 5843
Herpes virus major outer envelope glycoprotein 5 CBN77192 - 81 -   PF05109  
  1. The table shows the number of F. vesiculosus contigs mapping (BLASTX, E-value ≤ 10-10) to an E. siliculosus protein; descriptions are based on the accession and/or annotations in the KEGG, Pfam and GO databases. Expression is shown for Spring Female (F), Male (M) and Vegetative (Veg) libraries (as normalized reads; see Results for more details).