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Table 2 Selected female- and male-biased F. vesiculosus genes, based on orthology to E. siliculosus proteins

From: Sex-biased gene expression in the brown alga Fucus vesiculosus

Description

No. contigs

E. siliculosus Orthologue

F

M

Veg

KEGG

Pfam

GO

Female-biased:

Glucosylceramidase (family GH30)/ Lectin domain-like

2

CBN79893

51

4

3

 

PF02055; PF14200

 

Mannuronan C-5-epimerase 4

1

CBN79256

24

-

-

K00771

 

30158

Chondroitin-glucuronate 5-epimerase

2

CBJ29234

26

4

7

K01795

PF00124

 

Aquaporin PIP-type

2

CBN74001

15

3

4

K09864

PF00230

15250

Photosystem II reaction centre protein D1/psbA

66

CAV31176

930

291

807

K02703

  

Imm upregulated 3

24

CBN74763

378

157

254

   

Male-biased:

Transcription elongation factor Elf1 like

1

CBJ25475

15

36

11

 

PF05129

 

Touch receptor neuron protein Mec-17

2

CBJ49002

2

11

-

 

PF05301

 

Conserved unknown protein (Josephin)

1

CBJ28700

-

22

-

 

PF02099

 

BT1 family, putative pteridine transporter

2

CBN78031

14

49

16

 

PF03092

 

Cystathionine gamma-lyase

2

CBN75996

-

8

-

K00810

PF01053

3962; 5843

1-phosphatidylinositol-4-phosphate 5-kinase/ radial spoke

2

CBN78497

-

5

-

K00889

 

16308

Ca2+/calmodulin-dependent protein kinase

1

CBN78721

-

8

-

K00908

 

4684; 4685

Creatine kinase

4

CBN74482

-

48

-

K00933

PF02807; PF00217

5843

Creatine kinase

4

CBN77192

-

21

-

K00933

PF00217

4111; 5842

PAS/PAC histidine kinase; putative blue light receptor

6

CBJ26132

-

30

-

K02489

PF00989

4054

F-type H + -transporting ATPase subunit delta

2

CBJ32297

2

18

4

K02134

PF02823

5843

Calmodulin

4

CBN74598

-

25

-

K02183

 

5842

Calmodulin

1

CBN80105

-

14

-

K02183

 

5842

Mitogen-activated protein kinase

3

CBJ31415

-

94

-

K04368

PF00069

5842

cAMP-dependent protein kinase regulator

4

CBJ34040

-

22

-

K04739

PF00027

5842; 8603

Proliferating cell nuclear antigen

4

CBJ25497

3

18

-

K04802

PF00705; PF02747

 

Voltage dependent anion channel

3

CBN78926

5

33

12

K05862

PF01459

5842

Tubular mastigoneme-related protein (Sig)/ tenascin

3

CBJ28331

-

14

-

K06252

PF07974

 

SecE/Sec61-gamma subunit protein translocation complex

17

CBN73851

85

141

103

K07342

PF00584

5842; 5843; 5874

Alpha tubulin

24

CBN77373

122

387

80

K07374

PF03953; PF00091

4111; 5842; 5843

Beta tubulin

4

CBJ26064

-

14

-

K07375

PF03953

5842

Beta tubulin

3

CBN79446

15

128

20

K07375

PF03953

5843

Dynein flagellar outer dynein arm light chain

1

CBJ48309

-

8

-

K10411

 

5843

Putative flagellar outer dynein arm light chain

2

CBJ27240

-

16

2

K10419

PF03259

5842

Centrin

3

CBN74045

-

29

1

K10840

PF00036

4054; 5842; 8603

Centrin

2

CBN79657

-

8

-

K10840

 

5842; 5843

Histone H2A

5

CBJ31989

7

74

2

K11251

PF00125

5842; 5843; 5874

Histone H2A

2

CBJ32072

7

96

12

K11251

PF00125

5842

Histone H2B

13

CBJ32076

2

31

7

K11252

PF00125

5842; 5843; 5874

Histone H3

5

CBN79887

32

135

73

K11253

PF00125

5842; 5843; 5874

AP-2 complex subunit sigma-1

1

CBN77646

2

14

1

K11827

PF01217

5843

Herpes virus major outer envelope glycoprotein

5

CBN77192

-

81

-

 

PF05109

 
  1. The table shows the number of F. vesiculosus contigs mapping (BLASTX, E-value ≤ 10-10) to an E. siliculosus protein; descriptions are based on the accession and/or annotations in the KEGG, Pfam and GO databases. Expression is shown for Spring Female (F), Male (M) and Vegetative (Veg) libraries (as normalized reads; see Results for more details).
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BMC Genomics

ISSN: 1471-2164

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