Table 3 Summary of the classification of the Hevea brasiliensis AP2/ERF superfamily compared with several species: Arabidopsis thaliana[27], Populus trichocarpa[28], Vitis vinifera[45], Solanum lycopersicum[56], Gossypium hirsutum[48], Triticum aestivum[26]
From: Identification of the Hevea brasiliensisAP2/ERF superfamily by RNA sequencing
Family | Conserved domain | Number of members in each AP2/ERF gene family from different species | |||||||
|---|---|---|---|---|---|---|---|---|---|
| Â | Â | Â | Genome | Transcriptome | |||||
| Â | Â | Â | Arabidopsis | Populus | Vitis | Solanum | Gossypium | Triticum | Hevea |
AP2 | Double AP2/ERF domain | Total | 18 | 26 | 20 | 16 | 4 | 9 | 25 |
| Â | Â | Two full-length domains | 14 | 26 | 20 | 11 | 4 | 9 | 9 |
| Â | Â | One full-length domain plus one partial domain | - | - | - | - | - | - | 4 |
| Â | Â | Two partial domains | Â | Â | Â | Â | Â | - | 2 |
| Â | One AP2/ERF domain | One full-length domain | 4 | - | - | 5 | - | - | 7 |
| Â | Â | One partial domain | - | - | - | - | - | - | 3 |
ERF | Single AP2/ERF domain | Total | 122 | 169 | 122 | 93 | 148 | 104 | 141 |
| Â | Â | Full-length domain | 122 | 169 | 122 | 85 | 148 | 104 | 115 |
| Â | Â | Partial domain | - | - | - | 8 | - | - | 26 |
RAV | Single AP2/ERF domain plus one B3 domain | Â | 6 | 6 | 6 | 3 | 4 | 3 | 4 |
SOLOIST | Short single AP2/ERF domain | Â | 1 | 1 | 1 | - | - | 1 | 3 |
TOTAL NUMBER | Â | Â | 147 | 202 | 149 | 112 | 156 | 117 | 173 |