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Table 3 List of selected SNPs

From: Gene-based single nucleotide polymorphism discovery in bovine muscle using next-generation transcriptomic sequencing

SNP

SNP ID1

SNP name

Ensembl transcript ID

Chromosome

Position

Reference allele

Alternative allele

1

rs43270801

1_127257294

ENSBTAT00000044294

1

127257294

C

T

2

rs132988686

2_747896

ENSBTAT00000018496

2

747896

A

G

3

rs43299525

2_29938364

ENSBTAT00000038441

2

29938364

T

C

4

rs42982977

3_54421677

ENSBTAT00000055586

3

54421677

A

G

5

rs41255286

3_90246130

ENSBTAT00000015460

3

90246130

C

T

6

rs43360668

3_100666640

ENSBTAT00000003878

3

100666640

T

C

7

rs43414903

4_115404252

ENSBTAT00000028347

4

115404252

C

T

8

rs43447305

5_105538517

ENSBTAT00000009938

5

105538517

G

A

9

rs43484023

6_109946655

ENSBTAT00000060963

6

109946655

G

C

10

rs132780299

7_15769886

ENSBTAT00000013440

7

15769886

C

T

11

rs42722878

8_101639394

ENSBTAT00000001939

8

101639394

T

C

12

rs42722887

8_101642585

ENSBTAT00000001939

8

101642585

G

A

13

rs42722900

8_101645192

ENSBTAT00000001939

8

101645192

C

T

14

rs42722901

8_101645255

ENSBTAT00000001939

8

101645255

C

T

15

rs42306198

8_111749876

ENSBTAT00000008586

8

111749876

G

A

16

rs17870317

9_34687597

ENSBTAT00000038044

9

34687597

T

G

17

rs17870361

9_61258934

ENSBTAT00000015037

9

61258934

C

T

18

rs43626955

10_51842959

ENSBTAT00000007206

10

51842959

A

C

19

rs43626956

10_51843008

ENSBTAT00000007206

10

51843008

A

G

20

rs43626957

10_51843101

ENSBTAT00000007206

10

51843101

A

G

21

rs42284472

10_58147435

ENSBTAT00000008516

10

58147435

C

T

22

rs42748012

10_90111114

ENSBTAT00000016066

10

90111114

C

T

23

rs42738663

10_90126463

ENSBTAT00000016066

10

90126463

A

G

24

rs42311164

11_47748651

ENSBTAT00000005725

11

47748651

G

C

25

rs42613762

13_51391698

ENSBTAT00000025981

13

51391698

G

A

26

rs42555633

13_59146558

ENSBTAT00000002520

13

59146558

A

G

27

rs41255356

13_67838559

ENSBTAT00000018669

13

67838559

T

C

28

rs41712055

13_78093743

ENSBTAT00000026859

13

78093743

C

T

29

rs42929124

15_17647017

ENSBTAT00000004769

15

17647017

C

A

30

rs41774805

15_57309934

ENSBTAT00000006638

15

57309934

G

A

31

rs41720009

17_68389438

ENSBTAT00000053508

17

68389438

A

G

32

rs41905209

19_25255424

ENSBTAT00000061398

19

25255424

C

T

33

rs42803062

19_28474511

ENSBTAT00000044661

19

28474511

C

T

34

rs41930998

19_62070112

ENSBTAT00000009089

19

62070112

C

T

35

rs41969933

21_19283173

ENSBTAT00000014089

21

19283173

C

T

36

rs42013154

22_48725986

ENSBTAT00000019339

22

48725986

G

T

37

rs42016156

22_49203698

ENSBTAT00000045850

22

49203698

C

T

38

rs42015934

22_51561550

ENSBTAT00000007217

22

51561550

C

T

39

rs42451508

25_21535844

ENSBTAT00000008398

25

21535844

G

A

40

rs42174698

29_26367840

ENSBTAT00000002177

29

26367840

T

C

41

rs17871172

29_26368230

ENSBTAT00000002177

29

26368230

C

T

42

rs17871173

29_26368263

ENSBTAT00000002177

29

26368263

C

T

43

rs42188815

29_41795763

ENSBTAT00000012485

29

41795763

G

A

44

rs42188070

29_45033799

ENSBTAT00000023514

29

45033799

C

T

45

rs29024659

X_81605181

ENSBTAT00000003345

X

81605181

C

T

46

rs55617351

X_141005664

ENSBTAT00000029896

X

141005664

G

A

47

rs55617145

X_141005870

ENSBTAT00000029896

X

141005870

C

A

48

rs55617174

X_141005964

ENSBTAT00000029896

X

141005964

A

T

  1. 1 rs number from dbSNP.