SNP | SNP ID1 | Chromosome | Position2 | Gene | Alleles | Frequency (allele 1) | Genotype | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
 |  |  |  |  | 1/2 |  | AUB | BLA | CHA | HOL | LIM | MAN | MON | NOR | SAL | WAT | BIS | KOU |
1 | rs43299525 | 2 | 29,938,364 | ENSBTAT00000038441 | T/C | Â | 0.18 | 0 | 0.23 | 0.28 | 0.23 | 0.17 | 0.45 | 0.25 | 0.41 | T/T | T/T | T/T |
2 | rs41255286 | 3 | 90,246,130 | ENSBTAT00000015460 | C/T | Â | 0.23 | 0.14 | 0.18 | 0.36 | 0.27 | 0.42 | 0.45 | 0.67 | 0.14 | G/G | G/G | G/G |
3 | rs43360668 | 3 | 100,666,640 | ENSBTAT00000003878 | T/C | Â | 0.09 | 1 | 1 | 0.04 | 0.14 | 0.17 | 0.18 | 0.25 | 0.04 | G/G | G/G | G/G |
4 | rs43414903 | 4 | 115,404,252 | ENSBTAT00000028347 | C/T | Â | 0.18 | 0.09 | 0.27 | 0.09 | 0.14 | 0.08 | 0 | 0.25 | 0.09 | C/C | C/C | C/C |
5 | rs43484023 | 6 | 109,946,655 | ENSBTAT00000060963 | G/C | Â | 0.18 | 0.32 | 0.36 | 0.14 | 0.45 | 0.25 | 0.68 | 0.17 | 0.09 | G/C | C/C | C/C |
6 | rs42722878 | 8 | 101,639,394 | ENSBTAG00000020243 | T/C | Â | 0.18 | 0.04 | 0.36 | 0.04 | 0.59 | 0.25 | 0.41 | 0.17 | 0.04 | T/C | C/C | C/C |
7 | rs42722887 | 8 | 101,642,585 | ENSBTAG00000020244 | G/A | Â | 0.27 | 0.09 | 0.36 | 0.04 | 0.59 | 0.25 | 0.41 | 0.17 | 0.04 | G/A | G/G | G/G |
8 | rs42722900 | 8 | 101,645,192 | ENSBTAG00000020245 | C/T | Â | 0.04 | 0.04 | 0.14 | 0 | 0.41 | 0.25 | 0.27 | 0.08 | 0.04 | C/C | C/C | C/C |
9 | rs42722901 | 8 | 101,645,255 | ENSBTAG00000020246 | C/T | Â | 0.24 | 0.09 | 0.35 | 0.04 | 0.59 | 0.25 | 0.41 | 0.17 | 0.04 | C/T | C/C | C/C |
10 | rs42306198 | 8 | 111,749,876 | ENSBTAT00000008586 | G/A | Â | 0 | 0.04 | 0.09 | 0.04 | 0.18 | 0 | 0 | 0.08 | 0.04 | G/G | G/G | Â |
11 | rs17870317 | 9 | 34,687,597 | ENSBTAT00000038044 | T/G | Â | 0.33 | 0.32 | 0.45 | 0.45 | 0.41 | 0.50 | 0.32 | 0.67 | 0.32 | T/T | T/T | T/T |
12 | rs17870361 | 9 | 61,258,934 | ENSBTAT00000015037 | C/T | Â | 0.24 | 0.14 | 0.04 | 0.73 | 0.14 | 0.17 | 0.32 | 0 | 0.04 | C/C | C/C | Â |
13 | rs43626955 | 10 | 51,842,959 | ENSBTAT00000007206 | A/C | Â | 0.36 | 0.41 | 0.23 | 0.14 | 0.82 | 0.92 | 0.54 | 0.17 | 0.68 | A/C | C/C | C/C |
14 | rs43626956 | 10 | 51,843,008 | ENSBTAT00000007207 | A/G | Â | 0.36 | 0.41 | 0.23 | 0.14 | 0.82 | 0.92 | 0.54 | 0.25 | 0.68 | A/G | G/G | A/G |
15 | rs43626957 | 10 | 51,843,101 | ENSBTAT00000007208 | A/G | Â | 0.59 | 0.50 | 0.32 | 0.27 | 0.95 | 1 | 0.54 | 0.25 | 0.77 | A/G | G/G | Â |
16 | rs42748012 | 10 | 90,111,114 | ENSBTAT00000016066 | C/T | Â | 0.64 | 0.50 | 0.68 | 0.77 | 0.50 | 0.33 | 0.86 | 0.33 | 0.68 | T/T | C/C | C/C |
17 | rs42738663 | 10 | 90,126,463 | ENSBTAT00000016067 | A/G | Â | 0.36 | 0.50 | 0.32 | 0.23 | 0.50 | 0.67 | 0.14 | 0.67 | 0.32 | A/A | G/G | G/G |
18 | rs42311164 | 11 | 47,748,651 | ENSBTAT00000005725 | G/C | Â | 0.27 | 0.36 | 0.23 | 0.14 | 0.32 | 0.67 | 0.27 | 0.42 | 0.50 | G/G | C/C | C/C |
19 | rs42613762 | 13 | 51,391,698 | ENSBTAT00000025981 | G/A | Â | 0.73 | 0.95 | 0.70 | 0.23 | 0.68 | 0.92 | 0.54 | 0.58 | 0.86 | Â | G/A | G/A |
20 | rs41255356 | 13 | 67,838,559 | ENSBTAT00000018669 | T/C | Â | 0.36 | 0.32 | 0.73 | 0.23 | 0.54 | 0.08 | 0.27 | 0.83 | 0 | T/T | T/C | Â |
21 | rs41774805 | 15 | 57,309,934 | ENSBTAT00000006638 | G/A | Â | 0.27 | 0.45 | 0.27 | 0.27 | 0.64 | 0.33 | 0.36 | 0.50 | 0.50 | G/G | G/G | G/G |
22 | rs41720009 | 17 | 68,389,438 | ENSBTAT00000053508 | A/G | Â | 0.41 | 0.41 | 0.54 | 0.27 | 0.23 | 0.08 | 0.23 | 0.25 | 0.23 | G/G | A/A | Â |
23 | rs41905209 | 19 | 25,255,424 | ENSBTAT00000061398 | C/T | Â | 0.14 | 0 | 0.14 | 0.59 | 0.09 | 0.17 | 0 | 0.08 | 0 | C/C | C/C | C/C |
24 | rs42803062 | 19 | 28,474,511 | ENSBTAT00000044661 | C/T | Â | 0.36 | 0.68 | 0.59 | 0.23 | 0.59 | 0.08 | 0.73 | 0.58 | 0.54 | C/C | Â | Â |
25 | rs41969933 | 21 | 19,283,173 | ENSBTAT00000014089 | C/T | Â | 0.77 | 0.68 | 0.86 | 0.36 | 0.77 | 0.67 | 0.82 | 0.58 | 0.86 | C/C | C/C | T/T |
26 | rs42013154 | 22 | 48,725,986 | ENSBTAT00000019339 | G/T | Â | 0.27 | 0.04 | 0.14 | 0.09 | 0.36 | 0.25 | 0.23 | 0 | 0.14 | G/G | G/G | Â |
27 | rs42016156 | 22 | 49,203,698 | ENSBTAT00000045850 | C/T | Â | 0.56 | 0.50 | 0.65 | 0.32 | 0.82 | 1 | 0.86 | 0.58 | 0.68 | C/C | C/C | Â |
28 | rs42015934 | 22 | 51,561,550 | ENSBTAT00000007217 | C/T | Â | 0.23 | 0.04 | 0.14 | 0.04 | 0.04 | 0.17 | 0.18 | 0.33 | 0.09 | C/C | C/C | C/C |
29 | rs42451508 | 25 | 21,535,844 | ENSBTAT00000008398 | G/A | Â | 0.14 | 0.09 | 0.27 | 0.04 | 0.31 | 0.83 | 0.41 | 0.33 | 0.27 | G/G | G/G | G/G |
30 | rs42174698 | 29 | 26,367,840 | ENSBTAG00000001660 | T/C | Â | 0.36 | 0.50 | 0.91 | 0.54 | 0 | 0.50 | 0.04 | 0 | 0.41 | Â | C/C | C/C |
31 | rs17871172 | 29 | 26,368,230 | ENSBTAG00000001661 | C/T | Â | 0 | 0.04 | 0 | 0 | 0.04 | 0 | 0 | 0.08 | 0 | C/T | C/C | C/C |
32 | rs42188070 | 29 | 45,033,799 | ENSBTAT00000023514 | C/T | Â | 0.14 | 0.09 | 0.54 | 0.14 | 0.18 | 0.25 | 0.18 | 0.25 | 0.27 | C/C | C/C | C/C |
33 | rs29024659 | X | 81,605,181 | ENSBTAG00000002585 | C/T | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | C/C | C/C |
34 | rs55617351 | X | 141,005,664 | ENSBTAT00000029896 | G/A | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | G/G | A/A | A/A |
35 | rs55617145 | X | 141,005,870 | ENSBTAT00000029897 | C/A | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | C/C | A/A | C/C |
36 | rs55617174 | X | 141,005,964 | ENSBTAT00000029898 | A/T | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | T/T | T/T | Â |
Mean MAF (autosomes) | Â | Â | Â | Â | Â | Â | 0.25 | 0.22 | 0.25 | 0.19 | 0.27 | 0.20 | 0.26 | 0.24 | 0.20 | Â | Â | Â |