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Table 4 Number of next-generation sequencing reads that aligned to reference sequences from four salmonid pathogens

From: Transcriptome-wide comparison of sequence variation in divergent ecotypes of kokanee salmon

Pathogen

Number of reads aligned

[GenBank accession]

Stream-spawner library

Shore-spawner library

Flavobacterium psychrophilum

7,393

219

Complete genome

[AM398681]

Gyrodactylus salmonis

17

0

Partial ITS1, complete 5.8S rRNA gene, partial ITS2

[JN230351]

Saprolegnia ferax

393

1

Mitochondrion, complete genome

[AY534144]

Infectious hematopoietic necrosis virus 1

285

327

Glycoprotein (G) and non-virion protein (NV) genes

[IHNGNVJ]

  
  1. 1 IHNV was identified in the high coverage data set containing reads from both ecotypes and was not expected to show ecotype specificity.
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BMC Genomics

ISSN: 1471-2164

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