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Table 2 Genomic features of the species under analysis

From: Short and long-term genome stability analysis of prokaryotic genomes

Organism Core Acc. Sing. Ref. (id) Abbrev. N Pathogen Taxonomy
Acinetobacter baumannii 1994 1676 1889 ACICU (58765) ABAU 6 X γ
Bacillus anthracis 4318 1620 709 CDC 684 (59303) BANT 6 X Firmicutes
Bacillus cereus 3656 2672 3855 B4264 (58757) BCEREU 9 x Firmicutes
Bifidobacterium longum 1193 998 1458 NCC2705 (57939) BLONG 7 - Actino.
Buchnera aphidicola 326 252 40 Sg (57913) BAPHI 6 - γ
Burkholderia cenocepacia 5288 1527 2146 AU 1054 (58371) BCENO 4 X β
Burkholderia mallei 3526 1885 1963 NCTC 10229 (58383) BMALL 4 X β
Burkholderia pseudomallei 2942 3748 2871 K96243 (57733) BPMALL 5 X+plant β
Campylobacter jejuni 1005 752 911 NCTC 11168 (57587) CJEJU 7 X ε
Chlamydia trachomatis 851 47 27 Bu (61633) CTRAC 6 X Chlamydia
Chlamydophila pneumoniae 1020 52 147 J138 (57829) CPNEU 4 X Chlamydia
Clostridium botulinum 1153 3636 3201 A Hall (58931) CBOTU 11 X Firmicutes
Coxiella burnetii 1383 589 703 RSA 493 (57631) CBURN 5 X γ
Escherichia coli 2322 4997 7748 IAI1 (59377) ECOLI 30 x γ
Francisella tularensis 1160 512 654 OSU18 (58687) FTULA 7 X γ
Haemophilus influenzae 1130 695 542 86 028NP (58093) HINF 6 X γ
Lactococcus lactis 1566 671 1480 KF147 (42831) LLACT 4 - Firmicutes
Legionella pneumophila 2433 752 849 Paris (58211) LPNEU 5 X γ
Listeria monocytogenes 2474 623 557 EGD e (61583) LMONO 6 X Firmicutes
Methanococcus maripaludis 1487 225 497 C6 (58947) MMARI 4 - Euryarch.
Mycobacterium tuberculosis 3627 445 590 CDC1551 (57775) MTUBE 5 X Actino.
Neisseria meningitidis 1467 506 755 MC58 (57817) NMENI 5 X β
Prochlorococcus marinus 1232 1725 2027 CCMP1986 (57761) PMARIN 12 - Cyano.
Pseudomonas aeruginosa 4909 842 1694 PA7 (58627) PAERU 4 x(opp.) γ
Pseudomonas putida 3773 1279 2535 F1 (58355) PPUT 4 - γ
Ralstonia solanacearum 2442 2000 2698 CFBP2957 (50545) RSOLA 4 X plant α
Rhodobacter sphaeroides 2938 1177 2158 ATCC 17029 (58449) RSPHAE 4 - α
Rhodopseudomonas palustris 2610 2673 3516 TIE 1 (58995) RPALU 7 - α
Salmonella enterica 2645 2904 3506 Gallinarum 287 91 (59249) SENT 16 X γ
Shewanella baltica 3520 745 1891 OS185 (58743) SBALT 4 - γ
Staphylococcus aureus 1879 1166 906 Newman (58839) SAUR 15 X Firmicutes
Streptococcus pneumoniae 1407 1091 1137 ATCC 700669 (59287) SPNEU 14 X Firmicutes
Streptococcus suis 1544 478 764 P1 7 (32235) SSUIS 6 X Firmicutes
Sulcia muelleri 193 51 37 SMDSEM (59393) SMUELL 4 - Bacteroid.
Sulfolobus islandicus 2061 794 1152 M 16 4 (58841) SISLA 7 - Crenarch.
Vibrio cholerae 3224 595 795 M66 2 (59355) VCHOL 4 X γ
Xanthomonas campestris 3381 764 1854 ATCC 33913 (57887) XCAMP 4 X plant γ
Xylella fastidiosa 1639 542 1070 Temecula1 (57869) XFAST 4 X plant γ
Yersinia pestis 2791 1425 2158 Nepal516 (58609) YPEST 8 X γ
Yersinia pseudotuberculosis 3406 687 1339 IP 32953 (58157) YPTUB 4 X γ
  1. Core, number of proteins common to all genomes within the species; Acc., accessory proteins, present in at least 2 genomes; Sing., singleton proteins, present in only one genome; Ref.(id), strain used to perform inter-species comparisons and its project identifier in the NCBI Genome database; Abbrev. is the abbreviation used in the figures; N indicates the number of genomes belonging to each species; Pathogen, X are the pathogens, x indicate species comprising both pathogen and non pathogen strains and - is for non pathogens. Plant pathogens are also indicated and opp. indicates opportunist pathogens. P. aeruginosa was considered non-pathogen for probability calculations. Taxonomy is the taxonomy of the species.