Table 2 Top ten chromatin motifs and TF annotation
From: Discovering chromatin motifs using FAIRE sequencing and the human diploid genome
Region | Motif | Antisense motif | P value | Annotation | Ref | ||
|---|---|---|---|---|---|---|---|
TFe | hDPI logo | hDPI motif | |||||
Genome-wide regions | CACGTG | CACGTG | 7.61E-08 | Â | USF1 USF2 | MAX USF1 USF2 CREB1 TSNAX ZBTB7A TFEB IRF3 MLX | |
| Â | CTCCTGAC | GTCAGGAG | 2.36E-06 | RXR/RAR | Â | Â | |
| Â | CTGCAG | CTGCAG | 3.34E-06 | Â | Â | MAX IRF3 ZBTB25 | [21] |
| Â | TTTAGTAGAG | CTCTACTAAA | 3.42E-06 | Â | Â | Â | Â |
| Â | AGTAGAGA | TCTCTACT | 5.71E-06 | Â | Â | Â | Â |
| Â | GTGAAACCC | GGGTTTCAC | 7.98E-06 | Â | HCFC2 ZNF193 RAB18 | Â | [28] |
| Â | GGTGAAACCC | GGGTTTCACC | 1.23E-05 | Â | HCFC2 ZNF193 RAB18 | Â | [28] |
| Â | CTCCTGACCT | AGGTCAGGAG | 1.33E-05 | RXR/RAR | RXRA CREB1 ZNF313 ZNF655 | MAX USF2 RCOR3 RBM9 GLRX2 ZNF606 CBFA2T3 YBX1 HTATIP IRF3 ESRRA | |
| Â | AGGTCAGGA | TCCTGACCT | 1.41E-05 | RXR/RAR | RXRA CREB1 ZNF313 ZNF655 | MAX USF2 RCOR3 RBM9 GLRX2 ZNF606 CBFA2T3 YBX1 HTATIP IRF3 ESRRA | |
| Â | TCAGGA | TCCTGA | 1.85E-05 | Â | Â | Â | Â |
Intergenic regions | CACGTG | CACGTG | 1.53E-07 | Â | USF1 USF2 | MAX USF1 USF2 CREB1 TSNAX ZBTB7A TFEB IRF3 MLX | |
| Â | TGTATACA | TGTATACA | 1.59E-05 | Â | Â | Â | Â |
| Â | ATCACAA | TTGTGAT | 2.45E-05 | SOX9 | Â | Â | [25] |
| Â | ATGTATACA | TGTATACAT | 3.20E-05 | Â | Â | Â | Â |
| Â | GGGTTTCAC | GTGAAACCC | 3.63E-05 | Â | HCFC2 ZNF193 RAB18 | Â | [28] |
| Â | GGTGAAACCC | GGGTTTCACC | 5.67E-05 | Â | HCFC2 ZNF193 RAB18 | Â | [28] |
| Â | ATGTATACAT | ATGTATACAT | 5.87E-05 | Â | Â | Â | Â |
| Â | GGTGAAAC | GTTTCACC | 8.17E-05 | Â | ZNF193 RAB18 | Â | Â |
| Â | CCCGGG | CCCGGG | 1.24E-04 | Â | Â | Â | Â |
| Â | GGTGAAACC | GGTTTCACC | 1.37E-04 | Â | ZNF193 RAB18 | Â | Â |
Genic regions | CAGGCTGGA | TCCAGCCTG | 1.58E-06 | Â | Â | Â | Â |
| Â | ACTCCAGCCT | AGGCTGGAGT | 2.46E-06 | Â | Â | Â | Â |
| Â | CTCCAGCCTG | CAGGCTGGAG | 2.66E-06 | Â | Â | Â | Â |
| Â | TCCAGCCTGG | CCAGGCTGGA | 6.96E-06 | Â | PIR | MAX SIRT2 ZNF34 RFXANK ZBTB7A SCAND2 TSNAX KHDRBS1 ZNF655 TP73 IRF3 NFATC1 | [21] |
| Â | AGGCTGGA | TCCAGCCT | 6.96E-06 | Â | Â | Â | Â |
| Â | GGAGGA | TCCTCC | 1.16E-05 | Â | Â | Â | Â |
| Â | CTCCAGCCT | AGGCTGGAG | 1.17E-05 | Â | Â | Â | Â |
| Â | TCAGAT | ATCTGA | 1.57E-05 | Â | Â | Â | Â |
| Â | GGAGTG | CACTCC | 1.57E-05 | Â | Â | Â | Â |
| Â | CACTCCA | TGGAGTG | 2.17E-05 | MEF2A | Â | Â | [27] |