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Table 3 SNP counts per base pair in the five ScSuSy fragments within and between the three Saccharum species

From: Haplotype analysis of sucrose synthase gene family in three Saccharumspecies

Saccharumspecies SNP

ScSuSy1

ScSuSy2

ScSuSy3

ScSuSy4

ScSuSy5

total

bp/SNP

S. o.

4/489

4/484

7/569

7/470

2/577

24/2589

108

S. r.

7/489

3/484

7/569

9/470

6/577

32/2589

81

S. s.

11/489

6/484

7/569

9/470

3/577

38/2589

72

Total SNPs count between the Saccharum species

S. o. + S. r.

10/489

5/484

8/569

12/470

7/577

42/2589

62

S. o. + S. s.

14/489

9/484

10/569

15/470

5/577

53/2589

49

S. r + S. s.

16/489

9/484

10/569

15/470

8/577

58/2589

45

S. s. + S. o. + S. r.

20/489

10/484

11/569

18/470

9/577

51/2589

38

Identical SNPs count between the Saccharum species

S. o. \ S. r.

2/489

2/484

6/569

4/470

1/577

15/2589

172

S. o.\ S. s.

1/489

1/484

4/569

1/470

0

7/2589

370

S. s. \ S. r.

3/489

0

4/569

3/470

1/577

11/2589

238

S. s. \ S. o. \ S. r.

1/489

0

4/569

1/470

0

6/2589

435

  1. Note: S. o. : S. officinarum , S. r: S. robustum, S. s:S. spontaneum.