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Table 1 Characterisation of 103 T. urticae ABC proteins

From: A burst of ABC genes in the genome of the polyphagous spider mite Tetranychus urticae

Subfamily

Tetur ID1

Name

Length (AA)

Strand

Exons

Topology2

N-Glc3

O-Glc4

A (9)

tetur01g00580

TuABCA-01

1659

-

5

(6TM-NBD)2

5

 
 

tetur01g15090

TuABCA-02

1639

+

4

(7/8TM-NBD)2

2

1

 

tetur11g05030

TuABCA-03

1670

-

5

(5/6TM-NBD)2

3

 
 

tetur11g05040

TuABCA-04

1670

-

5

(6TM-NBD)2

2

 
 

tetur11g05200

TuABCA-05

1672

-

5

(6TM-NBD)2

2

 
 

tetur15g01990

TuABCA-06

1666

+

5

(6TM -NBD)2

3

 
 

tetur25g01640

TuABCA-07

2302

+

20

(6TM-NBD)2

8

 
 

tetur27g01890

TuABCA-08

2082

+

2

(7/4TM-NBD)2

5

27

 

tetur30g01960

TuABCA-09

1651

-

5

(6/8TM-NBD)2

3

 

B (4)

tetur11g04030

TuABCB-01

1294

+

15

(6TM-NBD)2

4

 
 

tetur11g04040

TuABCB-02

1292

+

16

(6TM-NBD)2

4

 
 

tetur17g02000

TuABCB-03

688

-

8

4TM-NBD

1

 
 

tetur32g01330

TuABCB-04

656

-

8

5TM-NBD

3

 

C (39)

tetur01g07880

TuABCC-01

1507

+

11

5TM-(5TM-NBD)2

1

2

 

tetur01g10390

TuABCC-02

1529

+

11

7TM-(5TM-NBD)2

  
 

tetur01g15310

TuABCC-03

1299

+

15

(5/6TM-NBD)2

5

1

 

tetur01g15330

TuABCC-04

1328

+

14

(7TM-NBD)2

5

 
 

tetur01g15340

TuABCC-05

1338

+

14

(8/7TM-NBD)2

3

 
 

tetur03g02240

TuABCC-06

1375

-

12

(6TM-NBD)2

2

 
 

tetur03g07460

TuABCC-07

1481

-

11

6TM-(5TM-NBD)2

2

 
 

tetur03g07490

TuABCC-08

1483

-

11

6TM-(5TM-NBD)2

1

 
 

tetur03g07840

TuABCC-09

1457

-

5

5TM-(6TM-NBD)2

1

 
 

tetur03g09800

TuABCC-10

1490

+

11

6TM-(5TM-NBD)2

 

1

 

tetur03g09880

TuABCC-11

1495

+

11

4TM-(5TM-NBD)2

1

1

 

tetur04g04360

TuABCC-12

1522

+

5

8TM-(5TM-NBD)2

3

 
 

tetur04g05540

TuABCC-13

1503

+

8

6TM-(5TM-NBD)2

5

 
 

tetur04g07860

TuABCC-14

1501

-

8

7TM-(4TM-NBD)2

3

 
 

tetur04g07910

TuABCC-15

1493

-

8

6TM-(5TM-NBD)2

2

 
 

tetur05g01110

TuABCC-16

1522

-

11

4TM-(5TM-NBD)2

6

1

 

tetur05g04300

TuABCC-17

1490

+

8

5TM-(6TM-NBD)2

6

2

 

tetur06g00360

TuABCC-18

1516

+

11

6TM-(5TM-NBD)2

4

1

 

tetur06g03510

TuABCC-19

1343

+

6

(6TM-NBD)2

2

 
 

tetur06g03560

TuABCC-20

1339

+

6

(5/7TM-NBD)2

2

 
 

tetur07g04290

TuABCC-21

1324

-

5

(6TM-NBD)2

1

 
 

tetur07g04410

TuABCC-22

1324

+

5

(6TM-NBD)2

1

 
 

tetur09g00580

TuABCC-23

1506

+

8

7TM-(6TM-NBD)2

2

 
 

tetur09g00590

TuABCC-24

1496

+

9

6TM-(6TM-NBD)2

1

 
 

tetur09g04610

TuABCC-25

1521

+

8

7TM-(6TM-NBD)2

4

1

 

tetur09g04620

TuABCC-26

1501

+

8

6TM-(5TM-NBD)2

5

 
 

tetur11g02060

TuABCC-27

1499

-

11

4TM-(6TM-NBD)2

1

 
 

tetur11g02120

TuABCC-28

1492

+

11

6TM-(4TM-NBD)2

2

1

 

tetur11g05990

TuABCC-29

1683

-

15

5TM-(6TM-NBD)2

6

 
 

tetur14g02290

TuABCC-30

1309

-

16

(5/7TM-NBD)2

4

 
 

tetur14g02300

TuABCC-31

1312

-

16

(5/7TM-NBD)2

5

 
 

tetur14g02310

TuABCC-32

1308

-

16

(6/7TM-NBD)2

3

1

 

tetur14g02320

TuABCC-33

1309

-

16

(7TM-NBD)2

2

1

 

tetur14g02330

TuABCC-34

1309

-

16

(5/7TM-NBD)2

2

 
 

tetur16g03480

TuABCC-35

1513

-

11

6TM-(5TM-NBD)2

2

1

 

tetur23g02452

TuABCC-36

1344

-

6

(8/6TM-NBD)2

2

 
 

tetur25g01780

TuABCC-37

1525

+

12

5TM-(5TM-NBD)2

  
 

tetur28g01950

TuABCC-38

1287

+

7

(6TM-NBD)2

3

 
 

tetur40g00010

TuABCC-39

1490

+

11

5TM-(5TM-NBD)2

 

1

D (2)

tetur05g06640

TuABCD-01

829

+

4

5TM-NBD

2

1

 

tetur35g01360

TuABCD-02

656

+

5

5TM-NBD

4

 

E (1)

tetur30g01400

TuABCE-01

614

-

2

NBD-NBD

  

F (3)

tetur20g02610

TuABCF-01

612

+

4

NBD-NBD

3

 
 

tetur29g00620

TuABCF-02

584

+

1

NBD-NBD

3

 
 

tetur32g00490

TuABCF-03

718

-

4

NBD-NBD

4

 

G (23)

tetur01g16280

TuABCG-01

915

-

6

NBD-7TM

1

1

 

tetur01g16290

TuABCG-02

643

+

3

NBD-6TM

1

 
 

tetur02g11270

TuABCG-03

689

+

11

NBD-6TM

1

 
 

tetur02g11400

TuABCG-04

811

-

2

NBD-6TM

3

1

 

tetur02g13710

TuABCG-05

810

-

2

NBD-6TM

3

 
 

tetur03g04350

TuABCG-06

687

-

2

NBD-6TM

2

 
 

tetur04g04550

TuABCG-07

720

+

2

NBD-6TM

3

1

 

tetur05g05440

TuABCG-08

721

+

2

NBD-8TM

1

1

 

tetur06g05430

TuABCG-09

646

-

12

NBD-7TM

3

 
 

tetur09g01930

TuABCG-10

685

+

9

NBD-5TM

2

 
 

tetur09g01950

TuABCG-11

682

+

9

NBD-5TM

1

 
 

tetur09g01960

TuABCG-12

683

+

9

NBD-5TM

3

 
 

tetur09g01970

TuABCG-13

687

+

9

NBD-6TM

3

 
 

tetur09g01980

TuABCG-14

680

+

9

NBD-6TM

4

 
 

tetur09g01990

TuABCG-15

687

+

9

NBD-6TM

2

4

 

tetur09g02000

TuABCG-16

682

+

9

NBD-7TM

3

 
 

tetur11g00520

TuABCG-17

792

-

1

NBD-8TM

2

3

 

tetur11g01800

TuABCG-18

790

-

1

NBD-8TM

2

3

 

tetur17g02510

TuABCG-19

832

-

4

NBD-4TM

2

1

 

tetur17g03970

TuABCG-20

700

-

2

NBD-8TM

5

 
 

tetur19g01160

TuABCG-21

775

-

1

NBD-7TM

4

2

 

tetur33g01719

TuABCG-22

760

+

1

NBD-6TM

1

 
 

tetur37g01090

TuABCG-23

779

-

1

NBD-7TM

1

14

H (22)

tetur01g03530

TuABCH-01

827

+

1

NBD-8TM

6

7

 

tetur01g05940

TuABCH-02

766

-

6

NBD-6TM

2

2

 

tetur01g05970

TuABCH-03

734

-

6

NBD-6TM

1

1

 

tetur03g03080

TuABCH-04

767

-

2

NBD-8TM

3

 
 

tetur03g05300

TuABCH-05

738

-

1

NBD-6TM

1

 
 

tetur04g06390

TuABCH-06

707

+

1

NBD-7TM

2

1

 

tetur05g05000

TuABCH-07

713

+

1

NBD-7TM

3

 
 

tetur07g05200

TuABCH-08

764

-

4

NBD-6TM

  
 

tetur12g03340

TuABCH-09

744

-

1

NBD-5TM

1

 
 

tetur12g03910

TuABCH-10

713

+

1

NBD-7TM

3

 
 

tetur13g02010

TuABCH-11

703

-

1

NBD-8TM

2

1

 

tetur13g02060

TuABCH-12

723

-

1

NBD-7TM

3

 
 

tetur18g00230

TuABCH-13

735

-

2

NBD-8TM

4

20

 

tetur19g01780

TuABCH-14

692

-

1

NBD-7TM

5

2

 

tetur21g00940

TuABCH-15

716

+

2

NBD-6TM

1

1

 

tetur26g02620

TuABCH-16

708

-

10

NBD-7TM

2

4

 

tetur28g00780

TuABCH-17

726

-

1

NBD-8TM

1

2

 

tetur28g00870

TuABCH-18

720

+

1

NBD-7TM

3

1

 

tetur30g00890

TuABCH-19

721

-

1

NBD-7TM

2

 
 

tetur32g01710

TuABCH-20

804

-

1

NBD-6TM

2

4

 

tetur36g00240

TuABCH-21

777

-

1

NBD-6TM

3

1

 

tetur36g00630

TuABCH-22

704

-

1

NBD-6TM

1

 
  1. 1T. urticae gene models can be accessed at the ORCAE genome portal, http://bioinformatics.psb.ugent.be/orcae/overview/Tetur[120].
  2. 2 transmembrane helices (TMs) were predicted using the SCAMPI server [128] while nucleotide binding domains (NBD) were determined using the ScanProSite facility [121] and Prosite profile PS50893; ( )2 indicates that the T. urticae ABC protein is a full transporter.
  3. 3 N-glycosylation sites were predicted using NetNGlyc 1.0 server [131]; only N-glycosylation site with a “potential” score > 0.5 and with a jury agreement were taken into account.
  4. 4O-glycosylation sites were predicted using NetOGlyc 3.1 server [132]; if the G-score was higher than 0.5 the residue was considered to be O-glycosylated; in this table the total number of O-glycosylated sites (glycosylated serines and threonines) is shown.
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BMC Genomics

ISSN: 1471-2164

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