Alterations in expression of endometrial genes coding for proteins secreted into the uterine lumen during conceptus elongation in cattle

BMC Genomics

Table 1 Candidate genes selected for analysis on the basis of their increased expression on Day 13 as compared to Day 7 of the estrous cycle from reference[42] and RNA sequencing (RNA-SEQ) data of pregnant and cyclic endometria on Day 13 from reference[41] for the most abundant genes expressed in the endometria, but not detected in the conceptus

Gene name	Gene description	Gene ID/Affymetrix probe ID	Platform	Fold change (log2) on Day 13 v Day 7	Average TPM (Day 13)	Reference
DCN	Decorin Precursor (Bone proteoglycan II)(PG-S2)	ENSBTAT00000004562	RNA-SEQ	N/A	1464.006	[44]
MGP	Bos taurus matrix Gla protein (MGP), mRNA.	ENSBTAT00000016414	RNA-SEQ	N/A	2371.502	[44]
PENK	Proenkephalin A Precursor [Contains Synenkephalin;Met-enkephalin(Opioid growth factor)(OGF);Met-enkephalin-Arg-Gly-Leu;Leu-enkephalin;Enkelytin;Met-enkephalin-Arg-Phe]	ENSBTAT00000006478	RNA-SEQ	N/A	907.056	[44]
PLIN2	Adipophilin (Adipose differentiation-related protein)(ADRP)	ENSBTAT00000047728	RNA-SEQ	N/A	62.58	[44]
APOA1	Apolipoprotein A-I	Bt.1229.1	Array	2.64	N/A	[45]
ARSA	Arylsulfatase A	Bt.1076.1	Array	3.14	N/A	[45]
CYR61	Cysteine-rich, angiogenic inducer, 61	Bt.22000.1	Array	2.87	N/A	[45]
LCAT	Lecithin-cholesterol acyltransferase	Bt.11126.3	Array	2.91	N/A	[45]
MUC13	Mucin 13, cell surface associated	Bt.12140.1	Array	26.72	N/A	[45]
NMN	Neuromedin N	Bt.10630.1	Array	2.72	N/A	[45]
NCDN	Neurochondrin	Bt.8806.1	Array	3.28	N/A	[45]
NPNT	Nephronectin	Bt.7393.1	Array	9.96	N/A	[45]
NXPH3	Neurexophilin 3	Bt.27342.1	Array	6.96	N/A	[45]
TINAGL1	Tubulointerstitial nephritis antigen-like 1	Bt.1300.1	Array	12.84	N/A	[45]

All genes selected for analysis encoded for secreted or extracellular proteins as determined by DAVID analysis (http://david.abcc.ncifcrf.gov/).