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Table 1 List of STSs analyzed to ascertain the genetic integrity of the Y-chromosome in the prostate cancer cell lines DU145 and LNCaP

From: Fate of the human Y chromosome linked genes and loci in prostate cancer cell lines DU145 and LNCaP

Serial No. STS Identifier Location Multi-Copy STS Status in DU145 STS status in LNCaP
1 sY14 SRY exon 1   + +
2 sY1240 PCDH11Y intron 3   + +
3 sY276 AMELY exon 4/intron 4   + +
4 sY1238 TBL1Y exon 11   + +
5 sY637 PRKY 5’ upstream of gene   + +
6 sY1319 PRKY 3’ UTR   + +
7 sY1250 Proximal boundary of TSPY array   + +
8 sY78 Alpha satellite (DYZ3) sequences in centromeric region * + +
9 sY1251 Boundary between centromere and Yq   + +
10 sY1317 USP9Y exon 3   + +
11 sY1316 USP9Y exon 26   + +
12 sY1234 DDX3Y (DBY) exon 9   + +
13 sY1231 UTY exon 8   + +
14 sY1235 XKRY exon 1 * + +
15 sY1260 CDY2 exon 1 * + +
16 sY1237 HSFY exon 2 * + +
17 sY121 Immediately distal to palindrome P4   + +
18 sY1322 Between CYorf15A & CYorf15B   + +
19 sY280 JARID1D (SMCY) exon 9/intron 9   + +
20 sY1233 EIF1AY exon 1   + +
21 sY1682 RPS4Y2 exon 1   + +
22 sY627 RBMY1 exon 12 * + +
23 sY1258 Boundary between unique sequence u1 & blue amplicon b1 in AZFc   + +
24 sY1161 PRY intron 2 * + +
25 sY1197 Internal boundary of Palindrome P3   + +
26 sY1191 Unique sequence u3 in AZFc   + +
27 sY1035 BPY2 intron 5 * + +
28 sY1318 DAZ exon 11 * + +
29 sY254 DAZ exon 3 * + +
30 sY1291 Red/gray boundary in AZFc   + +
31 sY1125 Blue/gray boundary in AZFc * + +
32 sY1054 Blue/yellow boundary in AZFc * + +
33 sY1190 Yellow amplicon in AZFc * + +
34 sY1263 CDY1 exon 1/intron 1 * + +
35 sY1206 Yellow/green boundaries in AZFc * + +
36 sY1201 Distal boundary of gray amplicon in AZFc   + +
37 sY1256 TSPY intron 5 * + +
38 sY1247 Boundary between PAR1 and MSY   + +
39 sY1230 TMSB4Y exon 1/intron 1   + +
40 sY1166 In MSY between distal Yq heterochromatin & PAR2   + +
41 sY274 RPS4Y1 intron 4   + +
42 sY1220 VCY exon 2 * + +
43 sY90 KALP intron 1   + +
44 sY210 STSP intron 5   + +
45 sY1254 TGIF2LY exon 1   + +
46 sY1239 NLGN4Y exon 1   + +
47 sY1273 Near boundary between MSY & PAR2   + +
48 sY238 ZFY intron 2   + +
49 sY1246 Proximal portion of distal Yq heterochromatin   + +
50 sY142 Proximal to AZFc   + +
51 sY160 Satellite-3 (DYZ1) sequences in distal Yq heterochromatin * + +
  1. Multi-copy STSs are indicated by star (*) and plus (+) sign denotes the presence of a particular STS.