Skip to main content

Advertisement

Table 3 S. cerevisiae GPEA analysis Biological Process for individual chromosomes

From: Interfacing cellular networks of S. cerevisiae and E. coli: Connecting dynamic and genetic information

S. cerevisiae GRN to PPN
GOID Term Size Edges1 Edges2 pval
GO:0009987 Cellular process 629 389 1509 1.5e-123
GO:0008152 Metabolic process 497 252 1067 7.5e-35
GO:0044237 Cellular metabolic process 481 245 1038 2.25e-33
GO:0044238 Primary metabolic process 450 227 998 1.1e-28
GO:0043170 Macromolecule metabolic process 356 176 854 8.5e-20
GO:0044260 Cellular macromolecule metabolic process 349 173 842 1.15e-19
GO:0006364 rRNA processing 32 18 39 1.2e-13
GO:0016072 rRNA metabolic process 33 18 41 3.45e-13
GO:0042254 Ribosome biogenesis 44 21 56 5.5e-12
GO:0022613 Ribonucleoprotein complex biogenesis 53 23 64 1.05e-10
S. cerevisiae GRN to TRN
GO:0009987 Cellular process 620 200 241 2.25e-51
GO:0008152 Metabolic process 492 131 147 2.905e-10
GO:0044237 Cellular metabolic process 477 127 143 2.747e-09
GO:0044238 Primary metabolic process 446 122 134 1.235e-08
GO:0043170 Macromolecule metabolic process 356 92 104 0.00291
GO:0044260 Cellular macromolecule metabolic process 349 89 102 0.007955
S. cerevisiae TRN to PPN
GO:0009987 Cellular process 631 255 1220 6.5e-63
GO:0008152 Metabolic process 499 160 923 4.15e-12
GO:0044237 Cellular metabolic process 483 153 895 1.95e-10
GO:0044238 Primary metabolic process 452 143 855 8e-09
GO:0044249 Cellular biosynthetic process 252 84 351 4.3e-06
GO:0080090 Regulation of primary metabolic process 144 46 222 6.5e-06
GO:0009058 Biosynthetic process 257 85 355 7e-06
GO:0031323 Regulation of cellular metabolic process 142 45 216 9e-06
GO:0010556 Regulation of macromolecule biosynthetic process 117 36 167 1.35e-05
GO:2000112 Regulation of cellular macromolecule biosynthetic process 117 36 167 1.35e-05
  1. Shown are the top 10 common significant terms between the gene regulatory network (GRN), the transcription regulatory network (TRN) and the protein-protein network (PPN). For ranking of terms the corresponding p-values of common significant terms between two networks were averaged. For GRN to TRN comparison only 6 terms were commonly significant.