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Table 3 S. cerevisiae GPEA analysis Biological Process for individual chromosomes

From: Interfacing cellular networks of S. cerevisiae and E. coli: Connecting dynamic and genetic information

S. cerevisiae GRN to PPN

GOID

Term

Size

Edges1

Edges2

pval

GO:0009987

Cellular process

629

389

1509

1.5e-123

GO:0008152

Metabolic process

497

252

1067

7.5e-35

GO:0044237

Cellular metabolic process

481

245

1038

2.25e-33

GO:0044238

Primary metabolic process

450

227

998

1.1e-28

GO:0043170

Macromolecule metabolic process

356

176

854

8.5e-20

GO:0044260

Cellular macromolecule metabolic process

349

173

842

1.15e-19

GO:0006364

rRNA processing

32

18

39

1.2e-13

GO:0016072

rRNA metabolic process

33

18

41

3.45e-13

GO:0042254

Ribosome biogenesis

44

21

56

5.5e-12

GO:0022613

Ribonucleoprotein complex biogenesis

53

23

64

1.05e-10

S. cerevisiae GRN to TRN

GO:0009987

Cellular process

620

200

241

2.25e-51

GO:0008152

Metabolic process

492

131

147

2.905e-10

GO:0044237

Cellular metabolic process

477

127

143

2.747e-09

GO:0044238

Primary metabolic process

446

122

134

1.235e-08

GO:0043170

Macromolecule metabolic process

356

92

104

0.00291

GO:0044260

Cellular macromolecule metabolic process

349

89

102

0.007955

S. cerevisiae TRN to PPN

GO:0009987

Cellular process

631

255

1220

6.5e-63

GO:0008152

Metabolic process

499

160

923

4.15e-12

GO:0044237

Cellular metabolic process

483

153

895

1.95e-10

GO:0044238

Primary metabolic process

452

143

855

8e-09

GO:0044249

Cellular biosynthetic process

252

84

351

4.3e-06

GO:0080090

Regulation of primary metabolic process

144

46

222

6.5e-06

GO:0009058

Biosynthetic process

257

85

355

7e-06

GO:0031323

Regulation of cellular metabolic process

142

45

216

9e-06

GO:0010556

Regulation of macromolecule biosynthetic process

117

36

167

1.35e-05

GO:2000112

Regulation of cellular macromolecule biosynthetic process

117

36

167

1.35e-05

  1. Shown are the top 10 common significant terms between the gene regulatory network (GRN), the transcription regulatory network (TRN) and the protein-protein network (PPN). For ranking of terms the corresponding p-values of common significant terms between two networks were averaged. For GRN to TRN comparison only 6 terms were commonly significant.