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Table 3 List of all biological processes where Ant-alus and Sens-alus are either enriched or depleted

From: A gene expression restriction network mediated by sense and antisense Alu sequences located on protein-coding messenger RNAs

Biological process

Ant-alu P

Sens-alus P

Ant-alus enriched

  

exocytosis

0.0003†

0.0807

synaptic vesicle exocytosis

0.0007†

0.0333

neurotransmitter secretion

0.0011†

0.1060

polysaccharide metabolic process

0.0022

0.4470

organelle organization

0.0033

0.3170

establishment or maintenance of chromatin architecture

0.0056

0.3100

mammary gland development

0.0090

0.0841

glycogen metabolic process

0.0153

0.5300

protein targeting

0.0183

0.4670

dorsal/ventral axis specification

0.0263

0.2970

vitamin catabolic process

0.0339

0.9620

catabolic process

0.0339

0.9620

cellular amino acid catabolic process

0.0385

0.5430

Ant-alus depleted

  

anion transport

0.0069

0.4800

visual perception

0.0132

0.5310

developmental process

0.0133

0.1630

nerve-nerve synaptic transmission

0.0148

0.3080

neuromuscular synaptic transmission

0.0153

0.5010

sensory perception

0.0218

0.4540

response to toxin

0.0327

0.5300

response to stimulus

0.0351

0.2500

cell motion

0.0439

0.2520

cell-cell adhesion

0.0469

0.3020

Sens-alus enriched

  

cyclic nucleotide metabolic process

0.5180

0.0040

termination of RNA polymerase II transcription

0.5570

0.0289

response to interferon-gamma

0.3500

0.0335

meiosis

0.2210

0.0346

cytokine-mediated signaling pathway

0.3820

0.0396

RNA localization

0.2320

0.0397

Sens-alus depleted

  

ectoderm development

0.1360

0.0234

mRNA 3′-end processing

0.2320

0.0255

mRNA polyadenylation

0.2200

0.0275

synaptic transmission

0.1390

0.0285

macrophage activation

0.4460

0.0387

cellular glucose homeostasis

0.0732

0.0390

embryonic development

0.4190

0.0450

defense response to bacterium

0.0749

0.0457

  1. †The accompanying False Discover Rate < 25%.
  2. The P values were nominal values without being corrected for multiple comparisons.