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Table 2 Cluster analysis of all small RNA libraries compared between two conditions

From: Physiological stressors and invasive plant infections alter the small RNA transcriptome of the rice blast fungus, Magnaporthe oryzae

Libraries compared Total clustersa No. of genes associated RTNsb TNsc Inverted repeats Tandem repeats Other repeats Intergenic regions
Mycelial libraries         
CM vs CS 4 2 0 0 0 0 0 2
CM vs MM 37 12 1 0 0 0 0 24
CS vs MM 31 6 0 0 2 0 0 23
NS vs CM 154 52 4 1 3 2 0 96
CM vs PQ 251 179 2 0 1 3 1 69
Infected Rice leaf libraries         
LMg0 vs 72 281 247 0 0 0 1 3 38
LMg0 vs 96 232 192 2 0 0 2 3 39
LMg72 vs 96 188 164 0 0 0 2 2 29
  1. a Several of these clusters associate with more than one genomic element.
  2. b Retrotransposons.
  3. c Transposons.