Physiological stressors and invasive plant infections alter the small RNA transcriptome of the rice blast fungus, Magnaporthe oryzae

Table 4 Features of sRNAs associated with transcriptionally down-regulated genes under different physiological stress conditions

Gene ID/Description	Condition	sRNA^a	Microarray^b	Signature	Origin
MGG_01439.7 inorganic phosphate transporter PHO84	PQ	95.00	-5.04	TGGGCTCGAGAGCAAGGCG	Exon sense
MGG_04470.7 nucleolar complex protein 14	NS	11.43	-1.88	TTGGCTGTGAATTCGGCG ^c	Exon antisense
				TTGGCTGTGAATTCGGCGT	Exon antisense
				TGGCTGTGAATTCGGCGT	Exon antisense
				CGAGTCTGATGCTGAGAGCTCAGGCA	Exon sense
				CGGAGAGGACGGAGAGGAGCTCC	Exon sense
MGG_01439.7 inorganic phosphate transporter PHO84	NS	89.5	-2.71	GGGAAGGATGGACAGGGG	Exon sense
MGG_16711.7 ^C Hypothetical protein	PQ	12.18	-1.92	AGCGTTTCTACTTTCTGATCACA	Intron sense
				AAGCGTTTCTACTTTCTGATCACA	Intron sense
				AAGCGTTTCTACTTTCTGATC	Intron sense
				CGGGTGCTGAGAAAGCGTT	Intron sense
				GCGGGTGCTGAGAAAGCGTTTCT	Intron sense
				GCGGGTGCTGAGAAAGCGTTT	Intron sense
				GCGGGTGCTGAGAAAGCGTT	Intron sense
				GCGGGTGCTGAGAAAGCGT	Intron sense
				GCGGGTGCTGAGAAAGCG	Intron sense
				TGCGGGTGCTGAGAAAGCGTT	Intron sense
				TGCGGGTGCTGAGAAAGCGT	Intron sense
				TGCGGGTGCTGAGAAAGCG	Intron sense
				TTGCGGGTGCTGAGAAAGCGTTTCT	Intron sense
				TTGCGGGTGCTGAGAAAGCGTT	Intron sense
				AATTGCGGGTGCTGAGAAAGCGTT	Intron sense
				GTGAAGTGATGAATACAATGCGT	Intron sense
				GTGAAGTGATGAATACAATGCG	Intron sense

^a Ratio of sRNA between particular physiological condition and CM library based on cluster data.
^b Expression of genes at particular physiological condition compare to CM using microarray.
^c This gene is selected to replace MGG_05869.6 of the annotation version6.

ISSN: 1471-2164