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Table 1 Summary of assembly and annotation results for P. poissonii and P. wilsonii using Trinity

From: Comparative transcriptome analysis and marker development of two closely related Primrose species (Primula poissonii and Primula wilsonii)

 

P. poissonii

P. wilsonii

Total number of reads

55,056,996 × 2

55,468,564 × 2

Total number of contigs

55,284

55,011

Mean length of contigs

655

722

Median length of contigs

432

469

N50 value of contigs

938

1085

Length range of contigs

200 ~ 16,932

200 ~ 12,384

GC content

41.3%

41.2%

Contigs with BLASTX hit

36,239 (65.6%)

35,857 (65.1%)

Contigs with annotation

28,435 (51.4%)

28,302 (51.4%)

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BMC Genomics

ISSN: 1471-2164

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