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Table 2 Gene Ontology terms significantly over-represented in the test dataset versus the reference set

From: Comparative transcriptome analysis and marker development of two closely related Primrose species (Primula poissonii and Primula wilsonii)

GO ID GO term P-value (Fisher’s exact test) Frequency in test set Frequency in reference set
  Biological Process    
GO:0007059 chromosome segregation 0.05 3 3
GO:0016790 thiolester hydrolase activity 0.03 6 11
GO:0035966 response to topologically incorrect protein 0.03 3 2
GO:0006281 DNA repair 0.04 14 43
GO:0006289 nucleotide-excision repair 0.01 4 2
GO:0032012 regulation of ARF protein signal transduction 0.05 3 3
GO:0006544 glycine metabolic process 0.05 3 3
GO:0042542 response to hydrogen peroxide 0.04 5 8
GO:0022613 ribonucleoprotein complex biogenesis 0.03 11 28
GO:0071843 cellular component biogenesis at cellular level 0.03 14 41
GO:0006979 response to oxidative stress 0.04 15 47
GO:0006974 response to DNA damage stimulus 0.02 16 47
GO:0044085 cellular component biogenesis 0.05 27 102
  Molecular Function    
GO:0008173 RNA methyltransferase activity 0.05 5 9
GO:0004221 ubiquitin thiolesterase activity 0.03 4 5
GO:0003960 NADPH: quinone reductase activity 0.03 3 2
GO:0016790 thiolester hydrolase activity 0.03 6 11
GO:0035091 phosphatidylinositol binding 0.05 5 9
  Cellular Component    
GO:0015934 large ribosomal subunit 0.03 5 9
GO:0005802 trans-Golgi network 0.04 3 2
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