Structural and functional annotation of the porcine immunome

BMC Genomics

Table 1 Summary of genes annotated by Immune Response Annotation Group (IRAG)

Chromosome	Number of genes*	Known genes annotated	Number of transcripts annotated	Number of protein coding transcripts annotated	Number of complete protein coding transcripts annotated	Number of predicted genes found to be pseudogenes**	Number of non-organism-supported# transcripts annotated
1	103	78	218	179	120	9	65
2	102	83	292	220	122	1	86
3	74	59	167	130	60	0	38
4	186	125	452	354	222	5	119
5	72	61	174	140	85	0	47
6	90	67	220	176	97	2	81
7	76	66	163	122	92	1	37
8	45	34	102	84	39	0	23
9	62	45	132	106	53	1	38
10	21	19	84	68	32	0	20
11	9	9	13	11	8	0	3
12	105	82	221	181	95	4	68
13	68	52	173	139	69	0	67
14	84	63	265	200	100	2	103
15	38	31	100	76	38	1	39
16	23	17	58	45	17	0	23
17	39	34	79	66	39	0	18
18	14	11	19	17	8	0	3
X	158	52	540	462	258	0	294
Total	1369	988	3472	2776	1554	26	1172

*Number of gene objects created in the Otterlace annotation system.
** Processed and non-processed pseudogenes are included.
# No porcine EST or cDNA sequence was available to create these transcript predictions.

ISSN: 1471-2164