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Figure 2 | BMC Genomics

Figure 2

From: Insights into organ-specific pathogen defense responses in plants: RNA-seq analysis of potato tuber-Phytophthora infestans interactions

Figure 2

A majority of RNA-seq reads map uniquely to the potato reference genome sequence. A pie chart summarizing results of alignment of Illumina RNA-seq reads from 36 water- or P. infestans-inoculated WT and +RB tuber samples to the potato reference genome sequence. The grey portion of the chart represents RNA-seq reads that failed quality checks and were filtered out of our data set (9.6% of all RNA-seq reads). The remaining 90.4% of RNA-seq reads passed quality checks. The blue portion of the chart represents reads that mapped uniquely to the potato genome sequence (78.7% of all RNA-seq reads). The black portion of the chart represents reads that mapped to multiple locations of the potato genome sequence (3.5%). The yellow portion of the chart represents reads that failed to map to the potato genome sequence (8.2%), including <0.01% of RNA-seq reads that mapped to P. infestans transcripts.

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