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Table 1 Genes that highly correlate with volatile compounds proposed as candidate genes

From: An integrative “omics” approach identifies new candidate genes to impact aroma volatiles in peach fruit

Genes for volatile cluster C1

id

Unigene annotation

Identified by

Match

PPN009B08

Protein At1g45233

HCA, CNA

ppa001502 m

PPN078H01

Acid phosphatase 1 precursor (EC 3.1.3.2) (Apase-1(1))

HCA

ppa010063 m

PP1009A02

CAMP response element binding (CREB) protein

HCA, CNA

ppa012739 m

PPN001H09

YUP8H12R.39 protein

HCA, CNA

ppa005452 m

PPN066C05

Tub family, putative

CNA

ppa006121 m

PPN066B05

Ripening-related protein-like

CNA

ppa011478 m

Genes for volatile cluster C2

id

Unigene annotation

Identified by

Match

PPN010C01

Prunus_persica transcript; similar to CRHB10 [Ceratopteris richardii (Triangle waterfern)]

HCA

ppa008984 m

PPN070H11

Cytochrome P450 monooxygenase CYP72A59

HCA, PC, CNA

ppa006310 m

PPN059A01

0.00E+00

PC

ppa013582 m

PPN026D01

no_annotation_available

PC, CNA

ppa009231 m

PPN037A04

Phosphatidylinositol transfer protein/retinal degeneration b protein

HCA, PC

ppa010020 m

Genes for volatile cluster C3

id

Unigene annotation

Identified by

Match

PP1002E07

Omega-6 fatty acid desaturase

HCA

ppa007098 m

PP1001A05

Pyruvate decarboxylase 1

HCA

ppa003086 m

PP1004F06

Vesicle-associated membrane protein 727

HCA

ppa010737 m

PP1004G05

no_annotation_available

HCA, CNA

ppa004658 m

PP1004H08

no_annotation_available

HCA

ppa004582 m

PP1005B05

AT4g00090/F6N15_8

HCA

ppa004482 m

PPN009C07

AJ533535 S3II Prunus persica cDNA clone PP_S3II_T5_SP6, mRNA sequence

HCA

ppa004933 m

PPN010B11

Serine-threonine protein kinase, putative

HCA, PC, CNA

ppa008251 m

PPN070B11

Kinase-like protein

HCA

ppa003659 m

PPN070D11

Protein At5g25010

HCA

ppa009131 m

PPN075B07

F8K7.22 protein

HCA

ppa008595 m

PPN032F06

PDR-like ABC-transporter

HCA, PC, CNA

ppa000267 m

PPN036E10

At5g03345

HCA, CNA

ppa015891 m

PPN069F09

PK11-C1

HCA, PC, CNA

ppa006108 m

PPN002B03

Malus_x_domestica transcript; similar to F17O7.2 [Arabidopsis thaliana]

PC

ppa007712 m

PPN031F12

Novel plant SNARE 13

HCA, PC

ppa010000 m

PPN031G12

Os09g0509300 protein

PC, CNA

ppa002575 m

PP1004C02

Calcium binding protein

PC, CNA

ppa011722 m

PPN051H01

At1g72790/F28P22_2

CNA

ppa002494 m

Genes for volatile cluster C4

id

Unigene annotation

Identified by

Match

PP1009D02

IAA16 protein

HCA, CNA

ppa011570 m

PPN027C05

PHB2

HCA, CNA

ppa009505 m

PPN063A04

T25K16.5

HCA

ppa011444 m

PP1000F05

Snakin-1

CNA

ppa014086 m

PPN017C08

ECA1 protein

CNA

ppa012387 m

PPN017B08

AT3g05350/T12H1_32

CNA

ppa002173 m

Genes for volatile cluster C5

id

Unigene annotation

Identified by

Match

PPN029H12

AJ827262 S3 Prunus persica cDNA clone S312E11, mRNA sequence

HCA, CNA

ppa025397 m

PPN053G07

Putative pod-specific dehydrogenase SAC25

HCA, CNA

ppa008709 m

PPN066C10

Cytochrome P450

HCA

ppa004664 m

PPN078H04

Putative pod-specific dehydrogenase SAC25

HCA, CNA

ppa008713 m

Genes for volatile cluster C7

id

Unigene annotation

Identified by

Match

PPN030E11

PP_LEa0004N09f Peach developing fruit mesocarp

HCA

ppa002860 m

PPN071H07

Enolase 1

HCA

ppa005779 m

PPN027H11

Phox-like

HCA

ppa001676 m

Genes for volatile cluster C11

id

Unigene annotation

Identified by

Match

PPN052H12

Desaturase delta 9

CNA

ppa009359m

Genes for volatile cluster C12

id

Unigene annotation

Identified by

Match

PP1003B11

0.00E+00

HCA

ppa010788 m

PP1009F04

PU1_plate44_F06 PU1 Prunus persica cDNA weakly similar to putative protein (AL161573)

HCA

ppa009611 m

PPN006F05

GTP-binding protein SAR1B

HCA

ppa011838 m

PPN033D11

Putative acid cluster protein 33

HCA

ppa006430 m

Genes for volatile cluster C13

id

Unigene annotation

Identified by

Match

PP1001G06

Cysteine protease CP1

HCA

ppa005199 m

PP1004F12

Dehydrin

HCA

ppa005514 m

PPN018G03

Putatative tyrosine aminotransferase

CNA

ppa006368 m

  1. Genes were identified by either: a Hierarchical Cluster Analysis (HCA), a simple Pearson Correlation (PC) analysis and/or a Correlation Network Analysis (CNA). For each gene, microarray id (id), the unigene annotation, and the most similar gene predicted in the peach genome (Match) are shown. The genes annotated as “0.00E+00” indicate that either no homologue was found or the homologue found has unknown function. For a detailed description of ChillPeach unigene functional annotation see Ogundiwin et al. [5].