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Table 2 Summary of predicted glycosyl hydrolase 35 protein homologues

From: Genomic and expression analysis of the flax (Linum usitatissimum) family of glycosyl hydrolase 35 genes

BGAL sub-family

LuBGAL

AA

MWa(kDA)

pIa

Signal peptideb(Cleavage Site)

Pfam domainc

Possible destinations (WolfPSORT)d

Possible destination (Plant-mPLOC)e

GH35

Lectin

Copper oxidase

D

41

761

84.697

9.07

 No

Y

N

N

cl, v, n, cy, m, pm

pm, cy

42

701

78.278

8.06

 No

Y

N

N

cl, n, er, cy

cw, cy

C1

32

816

91.547

9.03

 No

Y

Y

N

cy, px, m, , n

cw

31

756

84.239

9.07

 No

Y

Y

N

cy, n, px, v

cw

29

843

94.393

8.38

 Yes (34-35)

Y

Y

N

cl, ex, v, n

cw

30

833

93.226

7.42

 Yes (24-25)

Y

Y

N

cl, ex, v, n

cw

28

828

93.86

8.92

 Yes (24-25)

Y

Y

N

v, cl, er, g, m, p

cw

27

788

89.565

9.69

 Yes (22-23)

Y

N

N

v, ex, er, g, cl

cw

26

752

85.192

9.7

 Yes (25-26)

Y

N

N

v, g, cl, ex, er

cw

C2

40

821

92.792

8.68

 Yes (19-20)

Y

Y

N

er, pm, n, m, ex

cw

38

810

91.236

9.06

 Yes (24-25)

Y

N

N

er, v, g, cl, n, cy, pm

cw

39

871

98.135

8.94

 Yes (23-24)

Y

Y

N

v, er, g, cl, n, cy, pm

cw

33

829

91.265

5.96

 Yes (30-31)

Y

Y

N

n, er, pm, cl, cy

cw

37

718

80.437

5.58

 Yes (22-23)

Y

N

N

v, ex, er, g, cl

cw

34

961

108.198

5.48

 Yes (23-24)

Y

N

N

v, g, er

cw

35

647

71.944

8.88

 No

Y

N

N

n, cl, cy

cw

36

706

79.027

8.79

 No

Y

N

N

v, er, g, cl, n

cw

A1

9

727

81.545

8.69

 Yes (26-27)

Y

N

N

cl, ex, n, v, er, g

cw

8

683

76.432

8.72

 Yes (25-26)

Y

N

N

cl, ex, er, pm, m, cy, v

cw

13

849

94.313

6.62

 Yes (29-30)

Y

Y

N

v, cy, pm, cl, n, ex

cw

14

229

25.653

8.58

 No

Y

N

N

cl, n, cy

pm, cl

12

650

72.077

7.12

 Yes (28-29)

Y

Y

N

v, er, ex, g, cl, cy

cw, pm

16

849

94.704

7.37

 Yes (30-31)

Y

Y

N

er, pm, cy, cl, n, m, p

cw

15

802

89.416

6.65

 Yes (30-31)

Y

Y

N

er, pm, n, cl, cy, m, px

cw

5

844

93.587

6.79

 Yes (29-30)

Y

Y

N

cl, ex

cw

6

869

95.928

9.2

 No

Y

Y

N

cl, v, g, n, pm

cw

7

851

94.066

9.13

 Yes (24-25)

Y

Y

N

cl, ex

cw

4

717

80.14

9.16

 Yes (23-24)

Y

N

N

cl, n

cw

3

723

80.594

8.95

 Yes (23-24)

Y

N

N

cl, ex

cw

1

731

80.978

6.74

 Yes (29-30)

Y

N

N

cl, ex

cw

2

740

81.923

6.59

 Yes (29-30)

Y

N

N

cl, ex

cw

A4

11

897

100.599

6.38

 Yes (24-25)

Y

N

N

pm, g

cw

10

854

94.48

5.31

 Yes (24-25)

Y

Y

N

v, pm, er, g, cl

cw

18

297

32.849

7.62

 No

Y

N

N

m, cy, n, cl, pm, v, er

cl

17

836

91.017

8.14

 No

Y

Y

N

cy, v, n, m, pm, cl

cw

B

43

107

11.805

7.57

 Yes (31-32)

Y

N

N

ex, v, cl, cy, m, er

pm

A5

22

1460

162.474

5.41

 Yes (19-20)

Y

Y

N

ex, v, cl, n, pm

cw

24

1330

147.844

8.24

 Yes (23-24)

Y

Y

Y (3)

v, cl, n, pm, m, ex

pm, cw

21

871

96.999

8.57

 Yes (26-27)

Y

Y

N

er, n, pm, g, cy

cw

20

874

97.552

8.75

 Yes (26-27)

Y

Y

N

ex, v, er, g, cl, n, cy

cw

23

718

80.588

5.3

 Yes (19-20)

Y

N

N

ex, cl, v, cy

cw

25

261

29.969

8.26

 No

Y

N

N

n, cy, cl

cl

A2

19

880

98.216

6.52

 Yes (27-28)

Y

Y

N

cl, v, g, pm

cw

  1. aPredictions made with CLC Genomics Workbench 5.5.
  2. bSignalP 4.0 prediction [45].
  3. cPfam domains and locations were identified with CLC Genomics Workbench 5.5.
  4. dWolfPSORT prediction [46], in order of decreasing likelihood.
  5. ePlant-mPLOC prediction [47].
  6. Protein Destinations: cl (chloroplast), cy (cytosol), cs (cytoskeleton) cw (cell wall), er (endoplasmic reticulum), ex (extracellular), g (golgi apparatus), l (lysosome), m (mitochondria), n (nuclear), px (peroxisome), pm (plasma membrane), v (vacuolar membrane).