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Table 1 List of potentially novel and novel lipid associated complexes implicated in liver cancer

From: Enhancing the utility of Proteomics Signature Profiling (PSP) with Pathway Derived Subnets (PDSs), performance analysis and specialised ontologies

Novelty

CORUM ID

Complex name

Function

Lipid involvement

PN

1096

SNX and PDGF receptor complex

reported to be involved in transport and transmembrane signal transduction

lipid involvement yes

PN

1104

Transferrin receptor complex

reported involved in transport and receptor mediated endocytosis

lipid association yes

PN

563

Complex V; F1F0 ATPase

energy production, mitochondrial processes, particularly in heart muscle

lipid involvement yes

PN

654

BLOC1-BLOC2 complex

transport and targeting

lipid involvement potentially novel

PN

142

CD147-gamma-secretase complex (APH-1a, PS-1, PEN-2, NCT variant)

signaling, protein fate

lipid involvement yes

PN

652

AP3-Bloc1-complex

transport

lipid involvement yes

PN

657

Retromer complex (SNX1, SNX2, VPS35, VPS29, VPS26A)

protein targeting and transport

lipid involvement yes

PN

2837

Profilin 1 complex

cytoskeleton organisation, endocytosis, potential metastasis involvement

lipid involvement yes

PN

1060

Retromer complex (SNX1, SNX2, VPS35, VPS29, VPS26B)

transport

lipid association yes

N

280

HMGB1-HMGB2-HSC70-ERP60-GAPDH complex

DNA repair, nucleic acid binding, response to stress and DNA damage stimulus);high cancer association

lipid involvement not immediately decipherable

N

312

Cell cycle kinase complex CDK4l

cell cycle control, cancer association yes

lipid involvement not immediately decipherable

N

247

RalBP1-CCNB1-AP2A-NUMB-EPN1 complex

cell cycle control, endocytosis

lipid involvement not immediately decipherable

N

5230

CHUK-NFKB2-REL-IKBKG-SPAG9-NFKB1-NFKBIE-COPB2-TNIP1-NFKBIA-RELA-TNIP2 complex

Signaling, cancer association yes

lipid involvement not immediately decipherable

N

311

Cell cycle kinase complex CDK2

cell cycle control, cancer association yes

lipid involvement not immediately decipherable

N

5423

HSP70-BAG5-PARK2 complex

protein folding and stabilisation

lipid involvement not immediately decipherable

N

2390

CD98-LAT2-ITGB1 complex

cell adhesion, may define cell polarity which in turn has to do with invasiveness

lipid involvement not immediately decipherable

  1. *PN – potentially novel, N – novel.