Table 2 Number and proportion of reads mapped to different genome annotations and different genome builds
| Â | Annotation source and genome build | |||
|---|---|---|---|---|
NCBI Btau 4.2 | NCBI UMD 3.1 | Ensembl Btau 4.0 | Ensembl UMD 3.1 | |
Number of genes in annotation | 24,359 | 25,577 | 25,670 | 24,616 |
Number of transcripts in annotation | 19,757 | 20,681 | 26,977 | 22,118 |
Mean number of reads processed per embryo (Million reads ± SEM) | 37.6 ± 1.1 | 37.6 ± 1.1 | 37.6 ± 1.1 | 37.6 ± 1.1 |
Total number of reads mapped to annotated genes (Million reads ± SEM) | 22.9 ± 0.6 | 24.6 ± 0.6 | 27.0 ± 0.7 | 28.9 ± 0.8 |
% total reads mapped | 60.9% | 65.6% | 71.9% | 76.9% |
Number of uniquely mapped reads (Million reads ± SEM) | 18.0 ± 0.5 | 18.2 ± 0.6 | 23.8 ± 0.7 | 25.5 ± 0.7 |
% reads uniquely mapped | 48.1% | 48.4% | 63.2% | 67.7% |