Table 2 Gene ontology analysis of 972 up-regulated genes

biological process

Regulation of biological process

regulation of metabolic process

GO:0080090

regulation of primary metabolic process

53

324

8.30E-30

GO:0045449

regulation of transcription

51

321

3.00E-28

GO:0060255

regulation of macromolecule metabolic process

53

326

1.10E-29

GO:0010556

regulation of macromolecule biosynthetic process

52

322

4.40E-29

GO:0010468

regulation of gene expression

52

324

5.50E-29

GO:0009889

regulation of biosynthetic process

52

322

4.40E-29

GO:0051171

regulation of nitrogen compound metabolic process

51

323

3.90E-28

regulation of cellular process

GO:0007165

signal transduction

11

106

6.30E-05

GO:0007242

intracellular signaling cascade

10

68

6.90E-06

Biological regulation

GO:0065008

regulation of biological quality

12

14

4.40E-18

Multi-organism process

GO:0051707

response to other organism

9

39

4.80E-07

GO:0009617

response to bacterium

6

7

3.80E-09

Cellular process

cellular response to stimulus

GO:0070887

cellular response to chemical stimulus

7

43

0.00013

GO:0055085

transmembrane transport

9

12

1.10E-12

Metabolic process

primary metabolic process

GO:0005975

carbohydrate metabolic process

37

138

3.60E-29

GO:0005976

polysaccharide metabolic process

12

57

1.10E-08

GO:0006022

aminoglycan metabolic process

6

21

1.70E-05

GO:0006030

chitin metabolic process

6

21

1.70E-05

GO:0016052

carbohydrate catabolic process

17

45

1.10E-16

GO:0006629

lipid metabolic process

21

81

1.20E-16

GO:0019538

protein metabolic process

80

487

4.30E-44

GO:0006508

proteolysis

23

126

1.30E-14

secondary metabolic process

GO:0006721

terpenoid metabolic process

5

54

0.025

GO:0016101

diterpenoid metabolic process

5

35

0.0036

GO:0009698

phenylpropanoid metabolic process

6

11

2.10E-07

macromolecule metabolic process

GO:0019538

protein metabolic process

80

487

4.30E-44

GO:0043412

macromolecule modification

50

265

3.60E-31

GO:0006464

protein modification process

50

264

3.10E-31

GO:0044036

cell wall macromolecule metabolic process

11

21

6.10E-13

GO:0016998

cell wall macromolecule catabolic process

7

21

8.60E-07

GO:0010467

gene expression

55

419

3.50E-26

GO:0009059

macromolecule biosynthetic process

56

569

1.30E-20

Establishment of localization

transport

GO:0006811

ion transport

13

66

5.40E-09

GO:0006812

cation transport

10

65

4.60E-06

GO:0030001

metal ion transport

10

36

1.30E-08

Response to stimulus

GO:0009719

response to endogenous stimulus

8

106

0.0075

GO:0009628

response to abiotic stimulus

7

41

9.70E-05

GO:0009607

response to biotic stimulus

13

39

4.10E-12

GO:0006950

response to stress

46

103

2.00E-47

GO:0006952

defense response

16

59

3.40E-13

GO:0006979

response to oxidative stress

11

17

2.40E-14

GO:0042221

response to chemical stimulus

27

133

3.00E-18

GO:0010033

response to organic substance

8

106

0.0075

molecular function

Molecular transducer activity

GO:0004871

signal transducer activity

13

32

2.00E-13

Transporter activity

substrate-specific transporter activity

GO:0022891

substrate-specific transmembrane transporter

14

79

4.90E-09

GO:0015075

ion transmembrane transporter activity

9

68

5.20E-05

GO:0008324

cation transmembrane transporter activity

5

62

0.04

transmembrane transporter activity

GO:0016820

hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances

5

17

9.30E-05

GO:0042626

ATPase activity, coupled to transmembrane movement of substances

5

17

9.30E-05

active transmembrane transporter activity

GO:0015291

secondary active transmembrane transporter

7

24

2.20E-06

GO:0015399

primary active transmembrane transporter activity

5

25

0.00064

Antioxidant activity

GO:0004601

peroxidase activity

8

68

0.00036

Transcription regulator activity

GO:0003700

transcription factor activity

26

116

9.00E-19

Catalytic activity

oxidoreductase activity

GO:0004497

monooxygenase activity

21

47

2.40E-22

GO:0051213

dioxygenase activity

7

7

1.10E-11

GO:0015036

disulfide oxidoreductase activity

7

10

1.20E-09

transferase activity

GO:0016757

transferase activity, transferring glycosyl groups

24

31

1.00E-33

GO:0016758

transferase activity, transferring hexosyl groups

19

30

3.70E-24

GO:0016772

transferase activity, transferring phosphorus-containing groups

54

426

5.10E-25

GO:0016773

phosphotransferase activity, alcohol group as

47

244

6.30E-30

GO:0004672

protein kinase activity

42

235

1.40E-25

GO:0016301

kinase activity

51

261

1.10E-32

hydrolase activity

GO:0016798

hydrolase activity, acting on glycosyl bonds

25

87

6.40E-21

GO:0004553

hydrolase activity, hydrolyzing O-glycosy

24

85

6.50E-20

GO:0004568

chitinase activity

9

21

1.00E-09

Binding

carbohydrate binding

GO:0005529

sugar binding

6

10

9.10E-08

nucleic acid binding

ion binding

GO:0043169

cation binding

126

175

6.50E-166

GO:0046872

metal ion binding

111

173

1.60E-137

GO:0046914

transition metal ion binding

80

132

9.80E-97

GO:0008270

zinc ion binding

30

89

3.60E-27

GO:0005507

copper ion binding

6

19

9.00E-06

GO:0005509

calcium ion binding

20

39

7.80E-23